Evidence map›Paper›PMID 39421601›Full record

ArticleISME communications2024

Novel candidate taxa contribute to key metabolic processes in Fennoscandian Shield deep groundwaters.

Mark Dopson, Maryam Rezaei Somee, Carolina González-Rosales, Lauren M Lui, Stephanie Turner, Moritz Buck, Emelie Nilsson, George Westmeijer, Kamal Ashoor, Torben N Nielsen and 2 more

Abstract read
In one paragraph

Article in ISME communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Mark DopsonCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, 39231 Kalmar, Sweden.
Maryam Rezaei SomeeCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, 39231 Kalmar, Sweden.
Carolina González-RosalesCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, 39231 Kalmar, Sweden.
Lauren M LuiMolecular Ecosystems Biology Department, Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States.
Stephanie TurnerCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, 39231 Kalmar, Sweden.
Moritz BuckDepartment of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, P.O. Box 7050, 75005 Uppsala, Sweden.
Emelie NilssonCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, 39231 Kalmar, Sweden.
George WestmeijerCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, 39231 Kalmar, Sweden.
Kamal AshoorCentre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, 39231 Kalmar, Sweden.
Torben N NielsenMolecular Ecosystems Biology Department, Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States.
Maliheh MehrshadDepartment of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, P.O. Box 7050, 75005 Uppsala, Sweden.
Stefan BertilssonDepartment of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, P.O. Box 7050, 75005 Uppsala, Sweden.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The continental deep biosphere contains a vast reservoir of microorganisms, although a large proportion of its diversity remains both uncultured and undescribed. In this study, the metabolic potential (metagenomes) and activity (metatranscriptomes) of the microbial communities in Fennoscandian Shield deep subsurface groundwaters were characterized with a focus on novel taxa. DNA sequencing generated 1270 de-replicated metagenome-assembled genomes and single-amplified genomes, containing 7 novel classes, 34 orders, and 72 families. The majority of novel taxa were affiliated with

Indexed as

Candidatusdeep biospheremetagenomicsmetatranscriptomics

Identifiers

PMID39421601
PMCPMC11484514

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.