Evidence map›Paper›PMID 39421424›Full record

ArticlePeerJ2024

Characterization of the complete mitochondrial genome of the Sunda stink-badger (

Vijay Kumar Subbiah, Chrishen Robert Gomez, Dexter Miller Robben, Ranjita Subramaniam, Andrew James Hearn

Abstract read
In one paragraph

Article in PeerJ, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vijay Kumar SubbiahBiotechnology Research Insitute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia.
Chrishen Robert GomezBiotechnology Research Insitute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia.
Dexter Miller RobbenBiotechnology Research Insitute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia.
Ranjita SubramaniamBiotechnology Research Insitute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia.
Andrew James HearnWildlife Conservation Research Unit, Department of Biology, University of Oxford, Oxfordshire, United Kingdom.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The Mephitidae is a family of skunks and stink-badgers that includes 12 extant species in four genera, namely, Methods: Muscle tissue was obtained and the DNA was sequenced using a combination of Illumina Barcode Tagged Sequence (BTSeq) and Sanger sequencing techniques. The genome was annotated with MITOS and manually checked for accuracy. A circular map of the mitogenome was constructed with Proksee. Relative synonymous codon usage (RSCU) and codon frequency were calculated using MEGA-X. The protein coding genes (PCGs) were aligned with reference sequences from GenBank and used for the construction of phylogenetic trees (maximum liklihood (ML) and Bayesian inference (BI)). Additionally, due to the lack of available complete genomes in public databases, we constructed another tree with the Results: The complete circular mitogenome was 16,391 base pairs in length. It comprises the typical 13 protein-coding genes, 22 tRNAs, two ribosomal RNA genes, one control region (CR) and an L-strand replication origin (O

Indexed as

Genome, MitochondrialMustelidaePhylogenyAnimalsBorneoRNA, TransferSequence Analysis, DNARNA, TransferComparative mitogenomicsMephitidsMitogenome assemblyPhylogenomicsSkunkTaxonomy

Identifiers

PMID39421424
PMCPMC11485102

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.