Evidence map›Paper›PMID 39419962›Full record

ArticleNature communications2024

Early evolutionary branching across spatial domains predisposes to clonal replacement under chemotherapy in neuroblastoma.

Jenny Karlsson, Hiroaki Yasui, Adriana Mañas, Natalie Andersson, Karin Hansson, Kristina Aaltonen, Caroline Jansson, Geoffroy Durand, Naveen Ravi, Michele Ferro and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Jenny KarlssonDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0001-7681-0059
Hiroaki YasuiDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.
Adriana MañasDivision of Translational Cancer Research, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0002-6955-1754
Natalie AnderssonDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0002-3643-4404
Karin HanssonDivision of Translational Cancer Research, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0002-6993-7673
Kristina AaltonenDivision of Translational Cancer Research, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0001-5104-735X
Caroline JanssonDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.
Geoffroy DurandDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.
Naveen RaviDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.
Michele FerroDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.
Minjun YangDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0002-3324-1498
Subhayan ChattopadhyayDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.
Kajsa PaulssonDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0001-7950-222X
Diana SpieringsEuropean Research Institute for the Biology of Ageing (ERIBA), University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.ORCID 0000-0001-8403-474X
Floris FoijerEuropean Research Institute for the Biology of Ageing (ERIBA), University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.ORCID 0000-0003-0989-3127
Anders ValindDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0002-1654-6978
Daniel BexellDivision of Translational Cancer Research, Department of Laboratory Medicine, Lund University, Lund, Sweden.ORCID 0000-0001-9426-9550
David GisselssonDivision of Clinical Genetics, Department of Laboratory Medicine, Lund University, Lund, Sweden. david.gisselsson_nord@med.lu.se.ORCID 0000-0002-0301-426X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neuroblastoma (NB) is one of the most lethal childhood cancers due to its propensity to become treatment resistant. By spatial mapping of subclone geographies before and after chemotherapy across 89 tumor regions from 12 NBs, we find that densely packed territories of closely related subclones present at diagnosis are replaced under effective treatment by islands of distantly related survivor subclones, originating from a different most recent ancestor compared to lineages dominating before treatment. Conversely, in tumors that progressed under treatment, ancestors of subclones dominating later in disease are present already at diagnosis. Chemotherapy treated xenografts and cell culture models replicate these two contrasting scenarios and show branching evolution to be a constant feature of proliferating NB cells. Phylogenies based on whole genome sequencing of 505 individual NB cells indicate that a rich repertoire of parallel subclones emerges already with the first oncogenic mutations and lays the foundation for clonal replacement under treatment.

Indexed as

Clonal EvolutionNeuroblastomaAnimalsAntineoplastic AgentsCell Line, TumorClone CellsDrug Resistance, NeoplasmFemaleHumansMiceMutationPhylogenyWhole Genome SequencingXenograft Model Antitumor AssaysAntineoplastic Agents

Identifiers

PMID39419962
PMCPMC11486966

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.