Evidence map›Paper›PMID 39419544›Full record

ArticleRNA (New York, N.Y.)2024

An internal loop region is responsible for inherent target specificity of bacterial cold-shock proteins.

Satoshi Hasegawa, Rerina Inose, Mizuki Igarashi, Megumi Tsurumaki, Motofumi Saito, Tatsuo Yanagisawa, Akio Kanai, Teppei Morita

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Satoshi Hasegawa *Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan.
Rerina Inose *Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan.
Mizuki IgarashiInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan.
Megumi TsurumakiInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan.ORCID 0000-0002-2094-0425
Motofumi SaitoInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan.
Tatsuo YanagisawaRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0002-4911-344X
Akio KanaiInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan.ORCID 0000-0002-6362-2419
Teppei MoritaInstitute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata 997-0017, Japan morita-t@ttck.keio.ac.jp.ORCID 0000-0001-5057-5687

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cold-shock proteins (Csps), of around 70 amino acids, share a protein fold for the cold-shock domain (CSD) that contains RNA-binding motifs, RNP1 and RNP2, and constitute one family of bacterial RNA-binding proteins. Despite similar amino acid composition, Csps have been shown to individually possess inherent specific functions. Here, we identify the molecular differences in Csps that allow selective recognition of RNA targets. Using chimeras and mutants of

Indexed as

Cold Shock Proteins and PeptidesEscherichia coliEscherichia coli ProteinsRNA-Binding ProteinsAmino Acid SequenceBacterial ProteinsPhylogenyProtein BindingRNA, BacterialBacterial ProteinsCold Shock Proteins and PeptidesCspA protein, E coliEscherichia coli ProteinsRNA, BacterialRNA-Binding Proteinsbacteriacold-shock domainco-transcriptional regulationRNA-binding proteinsmall RNA

Identifiers

PMID39419544
PMCPMC11648934

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.