Evidence map›Paper›PMID 39417576›Full record

ArticleDevelopment (Cambridge, England)2024

Phylogenomic analysis of the Lake Kronotskoe species flock of Dolly Varden charr reveals genetic and developmental signatures of sympatric radiation.

Katherine C Woronowicz, Evgeny V Esin, Grigorii N Markevich, Crisvely Soto Martinez, Sarah K McMenamin, Jacob M Daane, Matthew P Harris, Fedor N Shkil

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Ambient Developmental Temperatures and Maternal Thyroid Supply Promote Early Life Diversification in Salmonids.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Katherine C WoronowiczDepartment of Orthopedics, Boston Children's Hospital and Department of Genetics, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-5323-1617
Evgeny V EsinLaboratory of Lower Vertebrate Ecology, Severtsov Institute, Moscow 119071, Russian Federation.ORCID 0000-0002-1200-6464
Grigorii N MarkevichLaboratory of Lower Vertebrate Ecology, Severtsov Institute, Moscow 119071, Russian Federation.ORCID 0000-0002-6893-4286
Crisvely Soto MartinezDepartment of Biology, Boston College, Chestnut Hill, MA 02467, USA.ORCID 0009-0006-3148-2059
Sarah K McMenaminDepartment of Biology, Boston College, Chestnut Hill, MA 02467, USA.ORCID 0000-0002-1154-5810
Jacob M DaaneDepartment of Biology and Biochemistry, University of Houston, Houston, TX 77204, USA.ORCID 0000-0003-3631-4514
Matthew P HarrisDepartment of Orthopedics, Boston Children's Hospital and Department of Genetics, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-7201-4693
Fedor N ShkilLaboratory of Evolutionary Morphology, Severtsov Institute, Moscow 119071, Russian Federation.ORCID 0000-0002-5637-8278

Funding

Illuminating the mechanisms that generate pattern and shape during growth and regeneration of the zebrafish finR35GM146467 · NIGMS · BOSTON COLLEGE · PI Sarah Kelly McMenamin · 2022 to 2026
$1.9M
Decoding regulatory nodes controlling growth and proportion of the skullF32DE029362 · NIDCR · BOSTON CHILDREN'S HOSPITAL · PI WORONOWICZ, KATHERINE CHRISTINE · 2020 to 2022
$208k
National Science Foundation NSF 1845513NIDCR NIH HHS F32 DE029362NIGMS NIH HHS R35 GM146467NIH HHS R35GM146467
6 · The paper itself

Abstract

Recent adaptive radiations provide experimental opportunities to parse the relationship between genomic variation and the origins of distinct phenotypes. Sympatric radiations of the charr complex (genus Salvelinus) present a trove for phylogenetic analyses as charrs have repeatedly diversified into multiple morphs with distinct feeding specializations. However, charr species flocks normally comprise only two to three lineages. Dolly Varden charr inhabiting Lake Kronotskoe represent the most extensive radiation described for the genus, containing at least seven lineages, each with defining morphological and ecological traits. Here, we perform the first genome-wide analysis of this species flock to parse the foundations of adaptive change. Our data support distinct, reproductively isolated lineages within the clade. We find that changes in genes associated with thyroid signaling and craniofacial development provided a foundational shift in evolution to the lake. The thyroid axis is further implicated in subsequent lineage partitioning events. These results delineate a genetic scenario for the diversification of specialized lineages and highlight a common axis of change biasing the generation of specific forms during adaptive radiation.

Indexed as

LakesPhylogenySympatryAnimalsBiological EvolutionThyroid GlandTroutCraniofacialEvolutionThyroidVariation

Identifiers

PMID39417576
PMCPMC11698049

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.