Evidence map›Paper›PMID 39416286›Full record

ArticleVirus evolution2024

Contrasting dynamics of two incursions of low-pathogenicity avian influenza virus into Australia.

Michelle Wille, Ivano Broz, Tanya Cherrington, Allison Crawley, Blaine Farrugia, Mark Ford, Melinda Frost, Joanne Grimsey, Peter D Kirkland, Shaylie Latimore and 18 more

Abstract read
In one paragraph

Article in Virus evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Michelle WilleCentre for Pathogen Genomics, Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne, Victoria 3000, Australia.ORCID https://orcid.org/0000-0002-5629-0196
Ivano BrozCommonwealth Scientific and Industrial Research Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, Victoria 3320, Australia.
Tanya CherringtonDepartment of Primary Industries and Regional Development, Western Australia 6151, Australia.
Allison CrawleyPrimary Industries and Regions, Adelaide, South Australia 5000, Australia.
Blaine FarrugiaNSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, New South Wales 2568, Australia.
Mark FordCommonwealth Scientific and Industrial Research Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, Victoria 3320, Australia.
Melinda FrostNSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, New South Wales 2568, Australia.
Joanne GrimseyCommonwealth Scientific and Industrial Research Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, Victoria 3320, Australia.
Peter D KirklandNSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, New South Wales 2568, Australia.
Shaylie LatimoreCommonwealth Scientific and Industrial Research Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, Victoria 3320, Australia.
Stacey E LynchAgriculture Victoria Research, AgriBio Centre for AgriBioscience, Bundoora, Victoria 3083, Australia.
Sue MartinDepartment of Natural Resources and Environment, Hobart, Tasmania 7000, Australia.
Cornelius MaterekePrimary Industries and Regions, Adelaide, South Australia 5000, Australia.
Peter T MeeAgriculture Victoria Research, AgriBio Centre for AgriBioscience, Bundoora, Victoria 3083, Australia.
Matthew J NeaveCommonwealth Scientific and Industrial Research Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, Victoria 3320, Australia.
Mark O'DeaDepartment of Primary Industries and Regional Development, Western Australia 6151, Australia.
Andrew J ReadNSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, New South Wales 2568, Australia.
Kim O'RileyAgriculture Victoria Research, AgriBio Centre for AgriBioscience, Bundoora, Victoria 3083, Australia.
Vittoria StevensCommonwealth Scientific and Industrial Research Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, Victoria 3320, Australia.
Sivapiragasam ThayaparanCommonwealth Scientific and Industrial Research Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, Victoria 3320, Australia.
Sara ZufanCentre for Pathogen Genomics, Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Melbourne, Victoria 3000, Australia.ORCID https://orcid.org/0000-0002-3606-0297
Silvia Ban de Gouvea PedrosoWildlife Health Australia, Dickson, Australian Capital Territory 2602, Australia.
Victoria GrilloWildlife Health Australia, Dickson, Australian Capital Territory 2602, Australia.
Andrew C BreedDepartment of Agriculture, Fisheries and Forestry, Canberra, Australia Capital Territory 2601, Australia.
Ian G BarrWHO Collaborating Centre for Reference and Research on Influenza, The Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria 3000, Australia.
Edward C HolmesSydney Institute for Infectious Diseases, School of Medical Sciences, The University of Sydney, Sydney, New South Wales 2006, Australia.ORCID https://orcid.org/0000-0001-9596-3552
Marcel KlaassenCentre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Geelong, Victoria 3217, Australia.
Frank Y K WongCommonwealth Scientific and Industrial Research Organisation (CSIRO), Australian Centre for Disease Preparedness, Geelong, Victoria 3320, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The current panzootic of high pathogenicity avian influenza virus H5N1 demonstrates how viral incursions can have major ramifications for wildlife and domestic animals. Herein, we describe the recent incursion into Australia of two low pathogenicity avian influenza virus subtypes, H4 and H10, that exhibited contrasting evolutionary dynamics. Viruses detected from national surveillance and disease investigations between 2020 and 2022 revealed 27 genomes, 24 of which have at least one segment more closely related to Eurasian or North American avian influenza lineages than those already circulating in Australia. Phylogenetic analysis revealed that H4 viruses circulating in shorebirds represent a recent incursion from Asia that is distinct from those circulating concurrently in Australian waterfowl. Analysis of the internal segments further demonstrates exclusive, persistent circulation in shorebirds. This contrasts with H10, where a novel lineage has emerged in wild waterfowl, poultry, and captive birds across Australia and has likely replaced previously circulating H10 lineages through competitive exclusion. Elucidating different dynamics for avian influenza incursions supports effective disease risk identification and communication that better informs disease preparedness and response.

Indexed as

avian influenzabird migrationevolutionH10H4influenza A viruslow-pathogenicity avian influenzaLPAIviral incursion

Identifiers

PMID39416286
PMCPMC11482279

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.