Evidence map›Paper›PMID 39415050›Full record

ArticleEMBO reports2024

Activity, structure, and diversity of Type II proline-rich antimicrobial peptides from insects.

Weiping Huang, Chetana Baliga, Elena V Aleksandrova, Gemma Atkinson, Yury S Polikanov, Nora Vázquez-Laslop, Alexander S Mankin

Abstract read
In one paragraph

Article in EMBO reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Insect I-Type Lysozymes Function as Antiviral Proteases by Forming Biomolecular Condensates.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  6. Interactions ofInternational journal of molecular sciences · 2025
    Article
  7. Article
  8. Article
  9. Proline-Rich Antimicrobial Peptides from Invertebrates.Molecules (Basel, Switzerland) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Weiping Huang *Department of Pharmaceutical Sciences, University of Illinois at Chicago, Chicago, IL, 60612, USA.ORCID 0000-0002-7306-3550
Chetana Baliga *Department of Pharmaceutical Sciences, University of Illinois at Chicago, Chicago, IL, 60612, USA.ORCID 0000-0001-9876-6810
Elena V AleksandrovaDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Gemma AtkinsonDepartment of Experimental Medical Science, Lund University, 221 00, Lund, Sweden.ORCID 0000-0002-4861-4584
Yury S PolikanovDepartment of Pharmaceutical Sciences, University of Illinois at Chicago, Chicago, IL, 60612, USA. yuryp@uic.edu.ORCID 0000-0002-5064-0327
Nora Vázquez-LaslopDepartment of Pharmaceutical Sciences, University of Illinois at Chicago, Chicago, IL, 60612, USA. nvazquez@uic.edu.ORCID 0000-0003-2256-693X
Alexander S MankinDepartment of Pharmaceutical Sciences, University of Illinois at Chicago, Chicago, IL, 60612, USA. shura@uic.edu.ORCID 0000-0002-3301-827X

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Advancing ribosome-targeting antibacterial peptides with a unique mechanism of actionR01AI162961 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALEXANDER S MANKIN, Terry William Moore · 2022 to 2026
$3.3M
Unraveling context specificity of translation by elucidating the mechanism of action of auxiliary translation factorsR35GM127134 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ALEXANDER S MANKIN · 2018 to 2026
$3.2M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Molecular mechanisms of action of ribosome-targeting antibiotics.R01GM132302 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI POLIKANOV, YURY · 2019 to 2022
$1.3M
Structural basis for ribosome function and inhibition in bacteria.R35GM151957 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI YURY POLIKANOV · 2024 to 2026
$1.2M
Advancing ribosome-targeting antibacterial peptides with a unique mechanism of actionR56AI162961 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MANKIN, ALEXANDER S, MOORE, TERRY WILLIAM · 2021 to 2021
$730k
DOE | SC | Argonne National Laboratory (ANL) DE-AC02-06CH11357HHS | National Institutes of Health (NIH) P30-GM124165HHS | National Institutes of Health (NIH) P30-GM133893HHS | National Institutes of Health (NIH) S10-OD021527HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM127134HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM132302HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM151957HHS | NIH | NIAID | Division of Microbiology and Infectious Diseases (DMID) AI162961National Science Foundation (NSF) MCB-1907273NE-CAT BAG #311950NIAID NIH HHS R01 AI162961NIAID NIH HHS R56 AI162961NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P30 GM133893NIGMS NIH HHS R01 GM132302NIGMS NIH HHS R35 GM127134NIGMS NIH HHS R35 GM151957NIH HHS S10 OD021527U.S. Department of Defense (DOD) KP1605010U.S. Department of Defense (DOD) SC0012704Vetenskapsrådet (VR) 2019-01085Vetenskapsrådet (VR) 2022-01603Vetenskapsrådet (VR) 2023-02353
6 · The paper itself

Abstract

Apidaecin 1b (Api), the first characterized Type II Proline-rich antimicrobial peptide (PrAMP), is encoded in the honey bee genome. It inhibits bacterial growth by binding in the nascent peptide exit tunnel of the ribosome after the release of the completed protein and trapping the release factors. By genome mining, we have identified 71 PrAMPs encoded in insect genomes as pre-pro-polyproteins. Having chemically synthesized and tested the activity of 26 peptides, we demonstrate that despite significant sequence variation in the N-terminal sequence, the majority of the PrAMPs that retain the conserved C-terminal sequence of Api are able to trap the ribosome at the stop codons and induce stop codon readthrough-all hallmarks of Type II PrAMP mode of action. Some of the characterized PrAMPs exhibit superior antibacterial activity in comparison with Api. The newly solved crystallographic structures of the ribosome complexed with Api and with the more active peptide Fva1 from the stingless bee demonstrate the universal placement of the PrAMPs' C-terminal pharmacophore in the post-release ribosome despite variations in their N-terminal sequence.

Indexed as

Antimicrobial Cationic PeptidesRibosomesAmino Acid SequenceAnimalsAnti-Bacterial AgentsAntimicrobial PeptidesBeesCodon, TerminatorCrystallography, X-RayInsectaInsect ProteinsModels, MolecularProlineAnti-Bacterial AgentsAntimicrobial Cationic PeptidesAntimicrobial PeptidesapidaecinCodon, TerminatorInsect ProteinsProlineAntibioticsPrAMPRibosomeStructureTranslation

Identifiers

PMID39415050
PMCPMC11549390

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.