Evidence map›Paper›PMID 39414861›Full record

ArticleNPJ systems biology and applications2024

Impacts of the feedback loop between sense-antisense RNAs in regulating circadian rhythms.

Koichiro Uriu, Juan P Hernandez-Sanchez, Shihoko Kojima

Abstract read
In one paragraph

Article in NPJ systems biology and applications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Koichiro UriuSchool of Life Science and Technology, Institute of Science Tokyo, Meguro, Tokyo, Japan. uriu@bio.titech.ac.jp.ORCID 0000-0003-1802-2470
Juan P Hernandez-SanchezDepartment of Biological Sciences, Fralin Life Sciences Institute, Virginia Tech, Blacksburg, VA, USA.ORCID 0009-0009-1367-4155
Shihoko KojimaDepartment of Biological Sciences, Fralin Life Sciences Institute, Virginia Tech, Blacksburg, VA, USA. skojima@vt.edu.ORCID 0000-0001-9579-7830

Funding

Functional analysis of a non-coding RNA in the mammalian circadian clock systemR01GM126223 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI KOJIMA, SHIHOKO · 2018 to 2022
$1.7M
NIGMS NIH HHS R01 GM126223U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM126223
6 · The paper itself

Abstract

Antisense transcripts are a unique group of non-coding RNAs and play regulatory roles in a variety of biological processes, including circadian rhythms. Per2AS is an antisense transcript to the sense core clock gene Period2 (Per2) in mouse and its expression is rhythmic and antiphasic to Per2. To understand the impact of Per2AS-Per2 interaction, we developed a new mathematical model that mechanistically described the mutually repressive relationship between Per2 and Per2AS. This mutual repression can regulate both amplitude and period of circadian oscillation by affecting a negative feedback regulation of Per2. Simulations from this model also fit with experimental observations that could not be fully explained by our previous model. Our revised model can not only serve as a foundation to build more detailed models to better understand the impact of Per2AS-Per2 interaction in the future, but also be used to analyze other sense-antisense RNA pairs that mutually repress each other.

Indexed as

Circadian RhythmFeedback, PhysiologicalPeriod Circadian ProteinsRNA, AntisenseAnimalsGene Expression RegulationMicePer2 protein, mousePeriod Circadian ProteinsRNA, Antisense

Identifiers

PMID39414861
PMCPMC11484753

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.