Evidence map›Paper›PMID 39414763›Full record

ArticleCell discovery2024

Single-cell spatiotemporal analysis reveals alveolar dendritic cell-T cell immunity hubs defending against pulmonary infection.

Boyi Cong, Xuan Dong, Zongheng Yang, Pin Yu, Yangyang Chai, Jiaqi Liu, Meihan Zhang, Yupeng Zang, Jingmin Kang, Yu Feng and 19 more

Abstract read
In one paragraph

Article in Cell discovery, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Single-Cell Insights Into Macrophage Subtypes in Pulmonary Infections.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Boyi Cong *State Key Laboratory of Medicinal Chemical Biology, Institute of Immunology, College of Life Sciences, Nankai University, Tianjin, China.
Xuan Dong *BGI-Shenzhen, Shenzhen, Guangdong, China.
Zongheng Yang *Department of Immunology, Center for Immunotherapy, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, China.
Pin Yu *Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences, Beijing, China.
Yangyang ChaiDepartment of Immunology, Center for Immunotherapy, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, China.
Jiaqi LiuDepartment of Immunology, Center for Immunotherapy, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, China.
Meihan ZhangState Key Laboratory of Medicinal Chemical Biology, Institute of Immunology, College of Life Sciences, Nankai University, Tianjin, China.
Yupeng ZangBGI-Shenzhen, Shenzhen, Guangdong, China.ORCID http://orcid.org/0000-0002-5098-1172
Jingmin KangBGI-Shenzhen, Shenzhen, Guangdong, China.ORCID http://orcid.org/0009-0006-5901-5268
Yu FengBGI-Shenzhen, Shenzhen, Guangdong, China.
Yi LiuBGI-Shenzhen, Shenzhen, Guangdong, China.
Weimin FengBGI-Shenzhen, Shenzhen, Guangdong, China.
Dehe WangChangping Laboratory, Beijing, China.
Wei DengInstitute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences, Beijing, China.
Fengdi LiInstitute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences, Beijing, China.
Zhiqi SongInstitute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences, Beijing, China.
Ziqiao WangDepartment of Immunology, Center for Immunotherapy, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-6720-4732
Xiaosu ChenState Key Laboratory of Medicinal Chemical Biology, Institute of Immunology, College of Life Sciences, Nankai University, Tianjin, China.
Hua QinState Key Laboratory of Medicinal Chemical Biology, Institute of Immunology, College of Life Sciences, Nankai University, Tianjin, China.ORCID http://orcid.org/0000-0002-5128-8986
Qinyi YuInstitute of Immunology, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China.
Zhiqing LiNational Key Laboratory of Immunity and Inflammation, Institute of Immunology, Navy Medical University, Shanghai, China.
Shuxun LiuNational Key Laboratory of Immunity and Inflammation, Institute of Immunology, Navy Medical University, Shanghai, China.
Xun XuBGI-Shenzhen, Shenzhen, Guangdong, China.ORCID http://orcid.org/0000-0002-5338-5173
Nanshan ZhongGuangzhou Laboratory, Guangzhou, Guangdong, China.
Xianwen RenChangping Laboratory, Beijing, China. renxwise@cpl.ac.cn.
Chuan QinInstitute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences, Beijing, China. chuanqin@vip.sina.com.
Longqi LiuBGI-Shenzhen, Shenzhen, Guangdong, China. liulongqi@genomics.cn.ORCID http://orcid.org/0000-0002-5828-5542
Jian WangBGI-Shenzhen, Shenzhen, Guangdong, China. wangjian@genomics.cn.
Xuetao CaoState Key Laboratory of Medicinal Chemical Biology, Institute of Immunology, College of Life Sciences, Nankai University, Tianjin, China. caoxt@immunol.org.ORCID http://orcid.org/0000-0001-9677-7647

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82388201
6 · The paper itself

Abstract

How immune cells are spatiotemporally coordinated in the lung to effectively monitor, respond to, and resolve infection and inflammation in primed form needs to be fully illustrated. Here we apply immunocartography, a high-resolution technique that integrates spatial and single-cell RNA sequencing (scRNA-seq) through deconvolution and co-localization analyses, to the SARS-CoV-2-infected Syrian hamster model. We generate a comprehensive transcriptome map of the whole process of pulmonary infection from physiological condition, infection initiation, severe pneumonia to natural recovery at organ scale and single-cell resolution, with 142,965 cells and 45 lung lobes from 25 hamsters at 5 time points. Integrative analysis identifies that alveolar dendritic cell-T cell immunity hubs, where Ccr7

Identifiers

PMID39414763
PMCPMC11484931

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.