Evidence map›Paper›PMID 39408729›Full record

ArticleInternational journal of molecular sciences2024

Selective Effect of DNA N6-Methyladenosine Modification on Transcriptional Genetic Variations in East Asian Samples.

Meiwei Luan, Kaining Chen, Wenwen Zhao, Minqiang Tang, Lingxia Wang, Shoubai Liu, Linan Zhu, Shangqian Xie

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Meiwei LuanSchool of Basic Medicine, Harbin Medical University, Harbin 150081, China.ORCID 0009-0000-3996-9167
Kaining ChenGuangzhou Women and Children's Medical Center, Guangzhou Medical University, Guangzhou 511436, China.
Wenwen ZhaoCollege of Forestry, Hainan University, Haikou 570228, China.
Minqiang TangCollege of Forestry, Hainan University, Haikou 570228, China.ORCID 0000-0002-8590-1814
Lingxia WangCollege of Forestry, Hainan University, Haikou 570228, China.
Shoubai LiuCollege of Forestry, Hainan University, Haikou 570228, China.
Linan ZhuSchool of Mechanical and Materials Engineering, Washington State University, Pullman, WA 99163, USA.
Shangqian XieCollege of Forestry, Hainan University, Haikou 570228, China.

Funding

Hainan Provincial Natural Science Foundation of China 320RC500National Natural Science Foundation of China 32060149 and 31871326
6 · The paper itself

Abstract

Genetic variations and DNA modification are two common dominant factors ubiquitous across the entire human genome and induce human disease, especially through static genetic variations in DNA or RNA that cause human genetic diseases. DNA N6-methyladenosine (6mA) methylation, as a new epigenetic modification mark, has been widely studied for regulatory biological processes in humans. However, the effect of DNA modification on dynamic transcriptional genetic variations from DNA to RNA has rarely been reported. Here, we identified DNA, RNA and transcriptional genetic variations from Illumina short-read sequencing data in East Asian samples (HX1 and AK1) and detected global DNA 6mA modification using single-molecule, real-time sequencing (SMRT) data. We decoded the effects of DNA 6mA modification on transcriptional genetic variations in East Asian samples and the results were extensively verified in the HeLa cell line. DNA 6mA modification had a stabilized distribution in the East Asian samples and the methylated genes were less likely to mutate than the non-methylated genes. For methylated genes, the 6mA density was positively correlated with the number of variations. DNA 6mA modification had a selective effect on transcriptional genetic variations from DNA to RNA, in which the dynamic transcriptional variations of heterozygous (0/1 to 0/1) and homozygous (1/1 to 1/1) were significantly affected by 6mA modification. The effect of DNA methylation on transcriptional genetic variations provides new insights into the influencing factors of DNA to RNA transcriptional regulation in the central doctrine of molecular biology.

Indexed as

AdenosineDNA MethylationGenetic VariationTranscription, GeneticDNAEast Asian PeopleEpigenesis, GeneticHeLa CellsHumansAdenosineDNAN-methyladenosine6mA modificationDNA and RNA variationEast Asianselective effecttranscriptional genetic variations

Identifiers

PMID39408729
PMCPMC11477068

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.