Evidence map›Paper›PMID 39408682›Full record

ArticleInternational journal of molecular sciences2024

SSCI: Self-Supervised Deep Learning Improves Network Structure for Cancer Driver Gene Identification.

Jialuo Xu, Jun Hao, Xingyu Liao, Xuequn Shang, Xingyi Li

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Disentangling Heterogeneous Molecular Networks for Multi-Omics-Driven Cancer Driver Discovery.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jialuo XuSchool of Computer Science, Northwestern Polytechnical University, Xi'an 710072, China.ORCID 0009-0005-0170-6456
Jun HaoSchool of Computer Science, Northwestern Polytechnical University, Xi'an 710072, China.
Xingyu LiaoSchool of Computer Science, Northwestern Polytechnical University, Xi'an 710072, China.
Xuequn ShangSchool of Computer Science, Northwestern Polytechnical University, Xi'an 710072, China.
Xingyi LiSchool of Computer Science, Northwestern Polytechnical University, Xi'an 710072, China.ORCID 0000-0002-6004-4174

Funding

Guangdong Basic and Applied Basic Research Foundation 2024A1515012602the National Key Research and Development Program of China 2022YFD1801200the National Natural Science Foundation of China 62202383
6 · The paper itself

Abstract

The pathogenesis of cancer is complex, involving abnormalities in some genes in organisms. Accurately identifying cancer genes is crucial for the early detection of cancer and personalized treatment, among other applications. Recent studies have used graph deep learning methods to identify cancer driver genes based on biological networks. However, incompleteness and the noise of the networks will weaken the performance of models. To address this, we propose a cancer driver gene identification method based on self-supervision for graph convolutional networks, which can efficiently enhance the structure of the network and further improve predictive accuracy. The reliability of SSCI is verified by the area under the receiver operating characteristic curves (AUROC), the area under the precision-recall curves (AUPRC), and the F1 score, with respective values of 0.966, 0.964, and 0.913. The results show that our method can identify cancer driver genes with strong discriminative power and biological interpretability.

Indexed as

Deep LearningGene Regulatory NetworksNeoplasmsComputational BiologyGene Expression Regulation, NeoplasticHumansNeural Networks, ComputerOncogenesROC CurveSupervised Machine Learningcancer driver genesgraph learningnetwork structure enhancementself-supervised deep learning

Identifiers

PMID39408682
PMCPMC11476395

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.