Evidence map›Paper›PMID 39407289›Full record

ArticleVirology journal2024

Molecular detection and genomic characterization of Samak Micromys paramyxovirus-1 and -2 in Micromys minutus, Republic of Korea.

Augustine Natasha, Sarah E Pye, Seung Hye Cho, Haryo Seno Pangestu, Jieun Park, Kyungmin Park, Sara P Prayitno, Bohyeon Kim, Jong Sun Lee, Jongwoo Kim and 6 more

Erratum issuedAbstract read
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Article in Virology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Augustine NatashaDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, 24252, Republic of Korea.
Sarah E PyeDepartment of Molecular Microbiology and Center for Women Infectious Disease Research, Washington University School of Medicine in St. Louis, St. Louis, MO, USA.
Seung Hye ChoDepartment of Biomedical Science, College of Natural Sciences, Hallym University, Chuncheon, 24252, Republic of Korea.
Haryo Seno PangestuDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, 24252, Republic of Korea.
Jieun ParkDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, 24252, Republic of Korea.
Kyungmin ParkDepartment of Microbiology, Korea University College of Medicine, Seoul, 02841, Republic of Korea.
Sara P PrayitnoDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, 24252, Republic of Korea.
Bohyeon KimDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, 24252, Republic of Korea.
Jong Sun LeeDepartment of Medical Genetics, College of Medicine, Hallym University, Chuncheon, 24252, Republic of Korea.
Jongwoo KimDepartment of Microbiology, Korea University College of Medicine, Seoul, 02841, Republic of Korea.
Shailesh BudhathokiDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, 24252, Republic of Korea.
Yeonsu OhCollege of Veterinary Medicine and Institute of Veterinary Science, Kangwon National University, Chuncheon, 24341, Republic of Korea.
Jin-Won SongDepartment of Microbiology, Korea University College of Medicine, Seoul, 02841, Republic of Korea.
Carolina B LópezDepartment of Molecular Microbiology and Center for Women Infectious Disease Research, Washington University School of Medicine in St. Louis, St. Louis, MO, USA.
Jun Gyo SuhDepartment of Medical Genetics, College of Medicine, Hallym University, Chuncheon, 24252, Republic of Korea. jgsuh@hallym.ac.kr.
Won-Keun KimDepartment of Microbiology, College of Medicine, Hallym University, Chuncheon, 24252, Republic of Korea. wkkim1061@hallym.ac.kr.

Funding

Institute for Basic Science IBS-R801-D9-A03Korea Institute of Marine Science and Technology promotion 20210466National Research Foundation of Korea 202300249142National Research Foundation of Korea 2023R1A2C2006105Novo Nordisk Fonden NF22SA0082041the Government-wide R&D to Advance Infectious Disease Prevention and Control, Republic of Korea HG23C1623
6 · The paper itself

Abstract

backgroundThe discovery of viruses in small mammalian populations, particularly rodents, has expanded the family Paramyxoviridae. The overlap in habitats between rodents and humans increases the risk of zoonotic events, underscoring the importance of active surveillance. Rodent species, such as Apodemus agrarius, are natural hosts for Paramyxoviridae in the Republic of Korea (ROK). However, it is unknown whether Paramyxoviridae is present in Micromys minutus, another common rodent.

methodHere, we screened M. minutus collected from the Gangwon Province in the ROK for paramyxoviruses using nested polymerase chain reaction and confirm positive samples by next-generation metagenomic sequencing. Complete paramyxovirus genomes were further characterized by phylogenetic analysis, amino acid similarity, secondary structure, and cophylogeny.

resultOverall, 57 of 145 (39.3%) M. minutus kidney samples tested positive for paramyxoviruses. Among them, four whole genome sequences were identified and clustered within the genus Jeilongvirus. One sequence was determined as Samak Micromys paramyxovirus 1 (SMPV-1; 19,911 nucleotides long) and three sequences as Samak Micromys paramyxovirus 2 (SMPV-2; 18,199 nucleotides long). SMPV-1 has a smaller hydrophobic gene and a longer glycoprotein gene than SMPV-2. Cophylogenetic analysis suggests that SMPV-1 evolved through co-divergence, whereas SMPV-2 was inferred to have undergone transfer events.

conclusionThese findings highlight the prevalence of paramyxoviruses in the wild and the potential of M. minutus as a natural viral reservoir. The discovery of SMPV-1 and SMPV - 2 also reveals the genetic diversity and evolutionary history of the genus Jeilongvirus in the Paramyxoviridae.

Indexed as

Genome, ViralParamyxoviridaePhylogenyAnimalsHigh-Throughput Nucleotide SequencingMetagenomicsMurinaeParamyxoviridae InfectionsRepublic of KoreaRNA, ViralWhole Genome SequencingRNA, Viral

Identifiers

PMID39407289
PMCPMC11481300

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.