Evidence map›Paper›PMID 39406876›Full record

ArticleScientific reports2024

Exploring the correlation between DNA methylation and biological age using an interpretable machine learning framework.

Sheng Zhou, Jing Chen, Shanshan Wei, Chengxing Zhou, Die Wang, Xiaofan Yan, Xun He, Pengcheng Yan

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sheng ZhouDepartment of Public Health and Health, Guizhou Medical University, Guizhou Province, China.
Jing ChenGuizhou Provincial Drug Administration inspection center, Guiyang, Guizhou Province, China.
Shanshan WeiDepartment of Public Health and Health, Guizhou Medical University, Guizhou Province, China.
Chengxing ZhouSchool of Biology&Engineering(School of Health Medicine Modern Industry), Guizhou Medical University, Guiyang, Guizhou, China.
Die WangCollege of Anesthesia, Guizhou Medical University, Guizhou Province, China.
Xiaofan YanSchool of Medicine and Health Management, Guizhou Medical University, Guizhou Province, China. 137859829@qq.com.
Xun HeSchool of Medicine and Health Management, Guizhou Medical University, Guizhou Province, China. 2812878586@qq.com.
Pengcheng YanSchool of Clinical Medicine, Guizhou Medical University, Guizhou Province, China. 1029473656@qq.com.

Funding

the Research Center for Pharmaceutical Economics and Management of Guizhou Medical University GMUMEM2022-B17
6 · The paper itself

Abstract

DNA methylation plays a significant role in regulating transcription and exhibits a systematic change with age. These changes can be used to predict an individual's age. First, to identify methylation sites associated with biological age; second, to construct a biological age prediction model and preliminarily explore the biological significance of methylation-associated genes using machine learning. A biological age prediction model was constructed using human methylation data through data preprocessing, feature selection procedures, statistical analysis, and machine learning techniques. Subsequently, 15 methylation data sets were subjected to in-depth analysis using SHAP, GO enrichment, and KEGG analysis. XGBoost, LightGBM, and CatBoost identified 15 groups of methylation sites associated with biological age. The cg23995914 locus was identified as the most significant contributor to predicting biological age by calculating SHAP values. Furthermore, GO enrichment and KEGG analyses were employed to initially explore the methylated loci's biological significance.

Indexed as

AgingDNA MethylationMachine LearningCpG IslandsHumansMaleBiological ageDNA methylationGO enrichment analysisInterpretable machine learningShapley Additive exPlanationsXGBoost

Identifiers

PMID39406876
PMCPMC11480495

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.