Evidence map›Paper›PMID 39406840›Full record

ArticleScientific reports2024

Pan-cancer and single-cell analysis reveal dual roles of lymphocyte activation gene-3 (LAG3) in cancer immunity and prognosis.

Yongfeng Wang, Yanzong Zhao, Guangming Zhang, Yifeng Lin, Chunling Fan, Hui Wei, Shude Chen, Ling Guan, Kan Liu, Shenhan Yu and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Yongfeng WangThe First Clinical Medical College of Lanzhou University, Lanzhou, 730000, Gansu, China.
Yanzong ZhaoSchool of Stomatology, Lanzhou University, Lanzhou, 730000, Gansu, China.
Guangming ZhangThe First Clinical Medical College of Lanzhou University, Lanzhou, 730000, Gansu, China.
Yifeng LinThe First Clinical Medical College of Lanzhou University, Lanzhou, 730000, Gansu, China.ORCID 0000-0002-6182-966X
Chunling FanSchool of Life Science, Lanzhou University, Lanzhou, 730000, Gansu, China.
Hui WeiSchool of Stomatology, Lanzhou University, Lanzhou, 730000, Gansu, China.
Shude ChenThe Second Clinical Medical College of Lanzhou University, Lanzhou, 730000, Gansu, China.
Ling GuanSchool of Stomatology, Lanzhou University, Lanzhou, 730000, Gansu, China.
Kan LiuThe Second Clinical Medical College of Lanzhou University, Lanzhou, 730000, Gansu, China.
Shenhan YuSchool of Stomatology, Lanzhou University, Lanzhou, 730000, Gansu, China.
Liangyin FuThe First Clinical Medical College of Lanzhou University, Lanzhou, 730000, Gansu, China.
Jing ZhangThe First Clinical Medical College of Lanzhou University, Lanzhou, 730000, Gansu, China.
Yuan YuanKey Laboratory of Molecular Diagnostics and Precision Medicine for Surgical Oncology in Gansu Province, Gansu Provincial Hospital, 204 Donggang West Road, Lanzhou, 730000, Gansu, China. lanzhouyy@163.com.
Jin HeThe First Clinical Medical College of Lanzhou University, Lanzhou, 730000, Gansu, China. hejin1978@163.com.
Hui CaiThe First Clinical Medical College of Lanzhou University, Lanzhou, 730000, Gansu, China. caialonteam@163.com.

Funding

Natural Science Foundation of Gansu Province, China No.18JR3RA052
6 · The paper itself

Abstract

Lymphocyte activating gene-3 (LAG3) is a distinctive T cell co-receptor that is expressed on the surface of lymphocytes. It plays a special inhibitory immune checkpoint role due to its unique domain and signaling pattern. Our aim is to explore the correlation between LAG3 in cancers and physiological processes related to a range of cancers, as well as build LAG3-related immunity and prognostic models. By comprehensively using of datasets and methods from TCGA, GTE-x and GEO databases, cBioPortal, HPA, Kaplan-Meier Plotter, Spearman, CellMinerTM, we delved deeper into the potential impact of the LAG3 in cancer development. These include expression differences, Localization of tumor cell subsets, immune infiltration, matrix infiltration, gene mutations, DNA methylation, signaling pathways and prognosis. Furthermore, we explored LAG3 interactions with different drugs. LAG3 is highly expressed in ACC (p < 0.001), BRCA (p < 0.001), DLBC (p < 0.001), ESCA (p < 0.001), GBM (p < 0.001), HNSC (p < 0.001), KIRC (p < 0.001), LGG (p < 0.001), LUAD (p < 0.01), LUSC (p < 0.001), PAAD (p < 0.001), PCPG (p < 0.01), SKCM (p < 0.001), STAD (p < 0.001), TGCT (p < 0.001) and THCA (p < 0.05), while lowly expressed in COAD (p < 0.001), LIHC (p < 0.05), OV (p < 0.001), PRAD (p < 0.001), READ (p < 0.001), UCEC (p < 0.001) and UCS (p < 0.001). High expression of LAG3 correlates with longer overall survival (OS) in BLCA (HR = 0.67, p < 0.05), CESC (HR = 0.3, p < 0.001), HNSC (HR = 0.67, p < 0.01), LUSC (HR = 0.71, p < 0.05), OV (HR = 0.65, p < 0.01), STAD (HR = 0.68, p < 0.05), and UCEC (HR = 0.57, p < 0.01). Conversely, in KIRC (HR = 1.85, p < 0.001), KIRP (HR = 2.81, p < 0.001), and THYM (HR = 8.92, p < 0.001), high LAG3 expression corresponds to shorter OS. Comprehensive results for recurrence-free survival (RFS) indicate that LAG3 acts as a protective factor in BLCA, CESC, OV, and UCEC. Moreover, LAG3 is widely expressed in tumor-associated lymphocytes, positively correlating with tumor immune scores and stromal scores, and significantly present in the C2 immune subtype across various tumors. High LAG3 expression correlates with increased immune infiltration. LAG3 shows associations with MSI, TMB, and the MMR system, participating in multiple signaling pathways including the T cell receptor pathway. It also demonstrates positive correlations with sensitivity to eleven different drugs. Unlike traditional inhibitory immune checkpoints, LAG3 exhibits dual roles in clinical and immune prognostication across pan-cancers, making it a significant predictive factor. In some cancers, LAG3 serves as a risk factor, indicating adverse clinical outcomes. Conversely, in BLCA, CESC, OV, and UCEC, LAG3 acts as a protective factor associated with longer patient survival. LAG3 demonstrates strong associations within tumor immunity, participating in a range of immune and inflammatory signaling pathways. Elevated levels of LAG3 are linked not only to T cell exhaustion but also to increased immune infiltration and polarization towards M1 macrophages.

Indexed as

Antigens, CDLymphocyte Activation Gene 3 ProteinNeoplasmsSingle-Cell AnalysisBiomarkers, TumorDNA MethylationGene Expression Regulation, NeoplasticHumansMutationPrognosisSignal TransductionAntigens, CDBiomarkers, TumorLag3 protein, humanLymphocyte Activation Gene 3 ProteinCD8+T cellImmune checkpointLAG3Pan-cancerPrognosis

Identifiers

PMID39406840
PMCPMC11480387

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.