Evidence map›Paper›PMID 39406715›Full record

ArticleNature communications2024

Time-reversal symmetry breaking in the chemosensory array reveals a general mechanism for dissipation-enhanced cooperative sensing.

David Hathcock, Qiwei Yu, Yuhai Tu

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Nature physics · 2026
    Article
  5. Article
  6. ChemotaxingbioRxiv : the preprint server for biology · 2025
    Article
  7. ChemotaxingArXiv · 2025
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

David Hathcock *IBM T. J. Watson Research Center, Yorktown Heights, USA.ORCID 0000-0003-4551-9239
Qiwei Yu *IBM T. J. Watson Research Center, Yorktown Heights, USA.ORCID 0000-0003-0610-3484
Yuhai TuIBM T. J. Watson Research Center, Yorktown Heights, USA. yuhai@us.ibm.com.ORCID 0000-0002-4589-981X

Funding

Molecular Mechanisms and Biochemical Circuits for Adaptation in Biological SystemsR35GM131734 · NIGMS · IBM THOMAS J. WATSON RESEARCH CENTER · PI TU, YUHAI · 2019 to 2024
$1.8M
NIGMS NIH HHS R35 GM131734U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM131734
6 · The paper itself

Abstract

The Escherichia coli chemoreceptors form an extensive array that achieves cooperative and adaptive sensing of extracellular signals. The receptors control the activity of histidine kinase CheA, which drives a nonequilibrium phosphorylation-dephosphorylation reaction cycle for response regulator CheY. Cooperativity and dissipation are both important aspects of chemotaxis signaling, yet their consequences have only been studied separately. Recent single-cell FRET measurements revealed that kinase activity of the array spontaneously switches between active and inactive states, with asymmetric switching times that signify time-reversal symmetry breaking in the underlying dynamics. Here, we present a nonequilibrium lattice model of the chemosensory array, which demonstrates that the observed asymmetric switching dynamics can only be explained by an interplay between the dissipative reactions within individual core units and the cooperative coupling between neighboring units. Microscopically, the switching time asymmetry originates from irreversible transition paths. The model shows that strong dissipation enables sensitive and rapid signaling response by relieving the speed-sensitivity trade-off, which can be tested by future single-cell experiments. Overall, our model provides a general framework for studying biological complexes composed of coupled subunits that are individually driven by dissipative cycles and the rich nonequilibrium physics within.

Indexed as

ChemotaxisEscherichia coliEscherichia coli ProteinsMethyl-Accepting Chemotaxis ProteinsSignal TransductionBacterial ProteinsFluorescence Resonance Energy TransferHistidine KinaseModels, BiologicalPhosphorylationBacterial ProteinscheA protein, E colicheY protein, E coliEscherichia coli ProteinsHistidine KinaseMethyl-Accepting Chemotaxis Proteins

Identifiers

PMID39406715
PMCPMC11480488

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.