Evidence map›Paper›PMID 39406501›Full record

ArticleGenome research2024

Global characterization of somatic mutations and DNA methylation changes during vegetative propagation in strawberries.

Shaoqiang Hu, Xiangguo Zeng, Yuguo Liu, Yongping Li, Minghao Qu, Wen-Biao Jiao, Yongchao Han, Chunying Kang

Abstract read
In one paragraph

Article in Genome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shaoqiang HuNational Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.
Xiangguo ZengHubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Institute of Industrial Crops, Hubei Academy of Agricultural Sciences, Wuhan 430063, China.
Yuguo LiuNational Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.
Yongping LiSchool of Breeding and Multiplication, Hainan University, Sanya 572025, China.
Minghao QuKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Plant Germplasm Research Center, Wuhan Botanical Garden, Innovative Academy of Seed Design, Chinese Academy of Sciences, Wuhan, Hubei 430074, China.
Wen-Biao JiaoNational Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0001-8355-2959
Yongchao HanHubei Key Laboratory of Vegetable Germplasm Enhancement and Genetic Improvement, Institute of Industrial Crops, Hubei Academy of Agricultural Sciences, Wuhan 430063, China; ckang@mail.hzau.edu.cn hyc660@126.com 382687178@qq.com.ORCID 0000-0001-9985-9912
Chunying KangNational Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China; ckang@mail.hzau.edu.cn hyc660@126.com 382687178@qq.com.ORCID 0000-0001-9269-5185

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Somatic mutations arise and accumulate during tissue culture and vegetative propagation, potentially affecting various traits in horticultural crops, but their characteristics are still unclear. Here, somatic mutations in regenerated woodland strawberry derived from tissue culture of shoot tips under different conditions and 12 cultivated strawberry individuals are analyzed by whole genome sequencing. The mutation frequency of single nucleotide variants is significantly increased with increased hormone levels or prolonged culture time in the range of 3.3 × 10

Indexed as

DNA MethylationFragariaMutationEpigenesis, GeneticGenome, PlantPolymorphism, Single NucleotideWhole Genome Sequencing

Identifiers

PMID39406501
PMCPMC11529994

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.