Evidence map›Paper›PMID 39405195›Full record

ArticleActa crystallographica Section B, Structural science, crystal engineering and materials2024

Contrasting conformational behaviors of molecules XXXI and XXXII in the seventh blind test of crystal structure prediction.

Gregory J O Beran, Cameron J Cook, Pablo A Unzueta

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Article in Acta crystallographica Section B, Structural science, crystal engineering and materials, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

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0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Taming Tautomerism in Organic Crystal Structure Prediction.Journal of the American Chemical Society · 2025
    Article
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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Gregory J O BeranDepartment of Chemistry, University of California, Riverside, CA 92521, USA.ORCID 0000-0002-2229-2580
Cameron J CookDepartment of Chemistry, University of California, Riverside, CA 92521, USA.
Pablo A UnzuetaDepartment of Chemistry, University of California, Riverside, CA 92521, USA.

Funding

Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
Access CHE110064National Science Foundation, Directorate for Mathematical and Physical Sciences CHE-1955554NIH HHS S10 OD016290U.S. Department of Energy, Office of Science DE-SC0014664
6 · The paper itself

Abstract

Accurate modeling of conformational energies is key to the crystal structure prediction of conformational polymorphs. Focusing on molecules XXXI and XXXII from the seventh blind test of crystal structure prediction, this study employs various electronic structure methods up to the level of domain-local pair natural orbital coupled cluster singles and doubles with perturbative triples [DLPNO-CCSD(T1)] to benchmark the conformational energies and to assess their impact on the crystal energy landscapes. Molecule XXXI proves to be a relatively straightforward case, with the conformational energies from generalized gradient approximation (GGA) functional B86bPBE-XDM changing only modestly when using more advanced density functionals such as PBE0-D4, ωB97M-V, and revDSD-PBEP86-D4, dispersion-corrected second-order Møller-Plesset perturbation theory (SCS-MP2D), or DLPNO-CCSD(T1). In contrast, the conformational energies of molecule XXXII prove difficult to determine reliably, and variations in the computed conformational energies appreciably impact the crystal energy landscape. Even high-level methods such as revDSD-PBEP86-D4 and SCS-MP2D exhibit significant disagreements with the DLPNO-CCSD(T1) benchmarks for molecule XXXII, highlighting the difficulty of predicting conformational energies for complex, drug-like molecules. The best-converged predicted crystal energy landscape obtained here for molecule XXXII disagrees significantly with what has been inferred about the solid-form landscape experimentally. The identified limitations of the calculations are probably insufficient to account for the discrepancies between theory and experiment on molecule XXXII, and further investigation of the experimental solid-form landscape would be valuable. Finally, assessment of several semi-empirical methods finds r

Indexed as

blind testconformational polymorphscrystal structure predictiondelocalization errorquantum chemistry

Identifiers

PMID39405195
PMCPMC11789167

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.