Evidence map›Paper›PMID 39404875›Full record

ArticleMikrochimica acta2024

Ultrasensitive detection of circulating tumor DNA using a CRISPR/Cas9 nickase-driven 3D DNA walker based on a COF-AuNPs sensing platform.

Yuxin Wei, Yang Fu, Chuanhai Li, Siyu Chen, Linzhi Xie, Mei Chen

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In one paragraph

Article in Mikrochimica acta, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yuxin WeiClinical Laboratory, Clinical Medical College and The First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan, 610500, P.R. China.
Yang FuSchool of Bioscience and Technology, Chengdu Medical College, Chengdu, Sichuan, 610500, P.R. China.
Chuanhai LiSchool of Bioscience and Technology, Chengdu Medical College, Chengdu, Sichuan, 610500, P.R. China.
Siyu ChenSchool of Bioscience and Technology, Chengdu Medical College, Chengdu, Sichuan, 610500, P.R. China.
Linzhi XieSchool of Public Health, Chengdu Medical College, Chengdu, Sichuan, 610500, P. R. China.
Mei ChenClinical Laboratory, Clinical Medical College and The First Affiliated Hospital of Chengdu Medical College, Chengdu, Sichuan, 610500, P.R. China. 396762073@qq.com.

Funding

CMC Excellent-talent Program 2024yxGzn08National Natural Science Foundation of China No. 82102516the Foundation of Sichuan Science and Technology Agency 2023NSFSC0537
6 · The paper itself

Abstract

A electrochemical biosensor was designed utilizing a CRISPR Cas9n-driven DNA walker combined with gold-nanosphere-like covalent organic frameworks (COFs-AuNPs) to detect breast cancer markers (PIK3CA E545K ctDNA). The DNA walker probe is activated only in the presence of circulating tumor deoxyribonucleic acid (ctDNA), binding to a support probe to form a double strand that is then specifically cleaved by the Cas9n/sgRNA complex. This cleavage produces numerous DNA fragments for signal amplification. The COF-AuNPs as electrode materials facilitate electronic transfer and provide additional active sites for the immobilization of nucleic acid probes. This setup achieves a detection limit of 1.76 aM, demonstrating high sensitivity. Additionally, Cas9n improves the specificity of the sensor, accurately distinguishing a pair of base-mismatched sequences, and reducing the occurrence of false positives. Overall, the sensor exhibits excellent selectivity, reproducibility, and potential for early diagnosis of breast cancer.

Indexed as

Biosensing TechniquesCirculating Tumor DNACRISPR-Cas SystemsGoldLimit of DetectionMetal NanoparticlesBiomarkers, TumorBreast NeoplasmsClass I Phosphatidylinositol 3-KinasesElectrochemical TechniquesFemaleHumansMetal-Organic FrameworksBiomarkers, TumorCirculating Tumor DNAClass I Phosphatidylinositol 3-KinasesGoldMetal-Organic FrameworksPIK3CA protein, human3D DNA walkerCOFs-AuNPsCRISPR/Cas9Electrochemical sensorSensing platformSquare-wave voltammetryTumor DNA

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.