Evidence map›Paper›PMID 39404463›Full record

ArticleJournal of bacteriology2024

The vibriophage-encoded inhibitor OrbA abrogates BREX-mediated defense through the ATPase BrxC.

Reid T Oshiro, Drew T Dunham, Kimberley D Seed

Abstract read
In one paragraph

Article in Journal of bacteriology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Lineage-specific defence systems of pandemicPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Reid T OshiroDepartment of Plant & Microbial Biology, University of California Berkeley, Berkeley, California, USA.ORCID 0000-0002-8419-1048
Drew T DunhamDepartment of Plant & Microbial Biology, University of California Berkeley, Berkeley, California, USA.
Kimberley D SeedDepartment of Plant & Microbial Biology, University of California Berkeley, Berkeley, California, USA.ORCID 0000-0002-0139-1600

Funding

Molecular mechanisms driving the coevolution of clinical isolates of phages and epidemic Vibrio choleraeR01AI153303 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Kimberley Diane Seed · 2020 to 2026
$4.3M
HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI153303NIAID NIH HHS R01 AI153303
6 · The paper itself

Abstract

Bacteria and phages are locked in a co-evolutionary arms race where each entity evolves mechanisms to restrict the proliferation of the other. Phage-encoded defense inhibitors have proven powerful tools to interrogate how defense systems function. A relatively common defense system is BREX (bacteriophage exclusion); however, how BREX functions to restrict phage infection remains poorly understood. A BREX system encoded by the

Indexed as

Bacterial ProteinsBacteriophagesVibrio choleraeAdenosine TriphosphatasesCholeraViral ProteinsAdenosine TriphosphatasesBacterial ProteinsViral ProteinsBREXcounterdefensephage defenseVibrio cholerae

Identifiers

PMID39404463
PMCPMC11580459

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.