Evidence map›Paper›PMID 39404262›Full record

ArticlemSystems2024

Marine biofilms: cyanobacteria factories for the global oceans.

Cheng Zhong, Shun Yamanouchi, Yingdong Li, Jiawei Chen, Tong Wei, Ruojun Wang, Kun Zhou, Aifang Cheng, Weiduo Hao, Hongbin Liu and 3 more

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Cheng ZhongDepartment of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China.ORCID 0000-0002-8709-7444
Shun YamanouchiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Yingdong LiDepartment of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China.
Jiawei ChenDepartment of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China.
Tong WeiDepartment of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China.
Ruojun WangDepartment of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China.
Kun ZhouDepartment of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China.
Aifang ChengDepartment of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China.
Weiduo HaoDepartment of Earth and Atmospheric Sciences, Faculty of Science, University of Alberta, Edmonton, Alberta, Canada.
Hongbin LiuDepartment of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China.ORCID 0000-0002-3184-2898
Kurt O KonhauserDepartment of Earth and Atmospheric Sciences, Faculty of Science, University of Alberta, Edmonton, Alberta, Canada.
Wataru IwasakiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Pei-Yuan QianDepartment of Ocean Science, The Hong Kong University of Science and Technology, Hong Kong, China.ORCID 0000-0003-4074-9078

Funding

MEXT | Japan Science and Technology Agency (JST) JPMJCR19S2MEXT | Japan Society for the Promotion of Science (JSPS) 19H05688, 18H04136Research Grants Council, University Grants Committee () HKUST PDFS2223-6S03Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) () 2021HJ01, SMSEGL20SC01
6 · The paper itself

Abstract

Marine biofilms were newly revealed as a giant microbial diversity pool for global oceans. However, the cyanobacterial diversity in marine biofilms within the upper seawater column and its ecological and evolutionary implications remains undetermined. Here, we reconstructed a full picture of modern marine cyanobacteria habitats by re-analyzing 9.3 terabyte metagenomic data sets and 2,648 metagenome-assembled genomes (MAGs). The abundances of cyanobacteria lineages exclusively detected in marine biofilms were up to ninefold higher than those in seawater at similar sample size. Analyses revealed that cyanobacteria in marine biofilms are specialists with strong geographical and environmental constraints on their genome and functional adaption, which is in stark contrast to the generalistic features of seawater-derived cyanobacteria. Molecular dating suggests that the important diversifications in biofilm-forming cyanobacteria appear to coincide with the Great Oxidation Event (GOE), "boring billion" middle Proterozoic, and the Neoproterozoic Oxidation Event (NOE). These new insights suggest that marine biofilms are large and important cyanobacterial factories for the global oceans. IMPORTANCE: Cyanobacteria, highly diverse microbial organisms, play a crucial role in Earth's oxygenation and biogeochemical cycling. However, their connection to these processes remains unclear, partly due to incomplete surveys of oceanic niches. Our study uncovered significant cyanobacterial diversity in marine biofilms, showing distinct niche differentiation compared to seawater counterparts. These patterns reflect three key stages of marine cyanobacterial diversification, coinciding with major geological events in the Earth's history.

Indexed as

BiofilmsCyanobacteriaOceans and SeasSeawaterMetagenomeMetagenomicsPhylogenybiodiversitycyanobacteriaevolutionmarine biofilmsmetagenomics

Identifiers

PMID39404262
PMCPMC11575276

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.