Evidence map›Paper›PMID 39401064›Full record

ArticleeLife2024

Systems analysis of miR-199a/b-5p and multiple miR-199a/b-5p targets during chondrogenesis.

Krutik Patel, Matt Barter, Jamie Soul, Peter Clark, Carole Proctor, Ian Clark, David Young, Daryl P Shanley

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Krutik Patel *Campus for Ageing and Vitality, Biosciences Institute, Newcastle University, Newcastle-upon-Tyne, United Kingdom.ORCID https://orcid.org/0000-0001-6806-8675
Matt Barter *Regenerative Medicine, Stem Cells, Transplantation, Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.
Jamie SoulRegenerative Medicine, Stem Cells, Transplantation, Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.
Peter ClarkCampus for Ageing and Vitality, Biosciences Institute, Newcastle University, Newcastle-upon-Tyne, United Kingdom.
Carole ProctorCampus for Ageing and Vitality, Biosciences Institute, Newcastle University, Newcastle-upon-Tyne, United Kingdom.
Ian ClarkSchool of Biological Sciences, University of East Anglia, Norwich, United Kingdom.ORCID https://orcid.org/0000-0003-2619-0896
David YoungRegenerative Medicine, Stem Cells, Transplantation, Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.ORCID https://orcid.org/0000-0002-7078-6745
Daryl P ShanleyCampus for Ageing and Vitality, Biosciences Institute, Newcastle University, Newcastle-upon-Tyne, United Kingdom.

Funding

Dunhill Medical Trust R476/0516Medical Research Council MR/P020941/1Novo Nordisk Fonden NNF17OC0027812Versus Arthritis 22043Versus Arthritis MR/P020941/1Versus Arthritis MR/R502182/1
6 · The paper itself

Abstract

Changes in chondrocyte gene expression can contribute to the development of osteoarthritis (OA), and so recognition of the regulative processes during chondrogenesis can lead to a better understanding of OA. microRNAs (miRNAs) are key regulators of gene expression in chondrocytes/OA, and we have used a combined experimental, bioinformatic, and systems biology approach to explore the multiple miRNA-mRNA interactions that regulate chondrogenesis. A longitudinal chondrogenesis bioinformatic analysis identified paralogues miR-199a-5p and miR-199b-5p as pro-chondrogenic regulators. Experimental work in human cells demonstrated alteration of miR-199a-5p or miR-199b-5p expression led to significant inverse modulation of key chondrogenic genes and extracellular matrix production. miR-199a/b-5p targets

Indexed as

ChondrocytesChondrogenesisComputational BiologyMicroRNAsGene Expression RegulationHumansOsteoarthritisMicroRNAsmirn199 microRNA, humanbioinformaticschondrogenesiscomputational biologyhumankinetic modellingmicroRNAmouseosteoarthritissystems biology

Identifiers

PMID39401064
PMCPMC11473111

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.