Evidence map›Paper›PMID 39399152›Full record

ArticleVirus evolution2024

Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study.

Seungwon Kim, Godfrey Kigozi, Michael A Martin, Ronald M Galiwango, Thomas C Quinn, Andrew D Redd, Robert Ssekubugu, David Bonsall, Deogratius Ssemwanga, Andrew Rambaut and 9 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Virus evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Seungwon KimDepartment of Pathology, Johns Hopkins School of Medicine, 600 N. Wolfe Street, Baltimore, MD 21205, United States.ORCID https://orcid.org/0000-0002-5509-0969
Godfrey KigoziResearch Department, Rakai Health Sciences Program, 4-6 Sanitary Lane, Old Bukoba Road, Kalisizo, Uganda.
Michael A MartinDepartment of Pathology, Johns Hopkins School of Medicine, 600 N. Wolfe Street, Baltimore, MD 21205, United States.ORCID https://orcid.org/0000-0002-9689-4066
Ronald M GaliwangoResearch Department, Rakai Health Sciences Program, 4-6 Sanitary Lane, Old Bukoba Road, Kalisizo, Uganda.
Thomas C QuinnResearch Department, Rakai Health Sciences Program, 4-6 Sanitary Lane, Old Bukoba Road, Kalisizo, Uganda.
Andrew D ReddDepartment of Medicine, Johns Hopkins School of Medicine, 600 N. Wolfe Street, Baltimore, MD 21205, United States.
Robert SsekubuguResearch Department, Rakai Health Sciences Program, 4-6 Sanitary Lane, Old Bukoba Road, Kalisizo, Uganda.
David BonsallPandemic Sciences Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Oxford OX3 7DQ, United Kingdom.
Deogratius SsemwangaMedical Research Council (MRC)/Uganda Virus Research Institute (UVRI) and London School of Hygiene and Tropical Medicine (LSHTM) Uganda Research Unit, Plot 51-59 Nakiwogo Road, Entebbe, Uganda.
Andrew RambautInstitute of Evolutionary Biology, University of Edinburgh, Charlotte Auerbach Road, Edinburgh EH9 3FL, United Kingdom.ORCID https://orcid.org/0000-0003-4337-3707
Joshua T HerbeckDepartment of Global Health, University of Washington, 3980 15th Ave NE, Seattle, WA 98195, United States.
Steven J ReynoldsResearch Department, Rakai Health Sciences Program, 4-6 Sanitary Lane, Old Bukoba Road, Kalisizo, Uganda.
Brian FoleyTheoretical Biology and Biophysics, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, NM 87545, United States.ORCID https://orcid.org/0000-0002-1086-0296
Lucie Abeler-DörnerPandemic Sciences Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Oxford OX3 7DQ, United Kingdom.
Christophe FraserPandemic Sciences Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Oxford OX3 7DQ, United Kingdom.
Oliver RatmannDepartment of Mathematics, Imperial College London, 180 Queen's Gate, London SW7 2AZ, United Kingdom.
Joseph KagaayiResearch Department, Rakai Health Sciences Program, 4-6 Sanitary Lane, Old Bukoba Road, Kalisizo, Uganda.
Oliver LaeyendeckerDepartment of Medicine, Johns Hopkins School of Medicine, 600 N. Wolfe Street, Baltimore, MD 21205, United States.ORCID https://orcid.org/0000-0002-6429-4760
Mary K GrabowskiDepartment of Pathology, Johns Hopkins School of Medicine, 600 N. Wolfe Street, Baltimore, MD 21205, United States.

Funding

Long-term impact of universal treatment and dolutegravir on population HIV virologic and incidence outcomes in Africa: The LONGVIEW StudyR01AI155080 · NIAID · JOHNS HOPKINS UNIVERSITY · PI GRABOWSKI, MARY KATHRYN · 2021 to 2024
$2.5M
NIAID NIH HHS R01 AI155080
6 · The paper itself

Abstract

There is limited data on human immunodeficiency virus (HIV) evolutionary trends in African populations. We evaluated changes in HIV viral diversity and genetic divergence in southern Uganda over a 24-year period spanning the introduction and scale-up of HIV prevention and treatment programs using HIV sequence and survey data from the Rakai Community Cohort Study, an open longitudinal population-based HIV surveillance cohort.

Indexed as

genetic diversityHIVrecombinantsubtypeUganda

Identifiers

PMID39399152
PMCPMC11468842

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.