Evidence map›Paper›PMID 39397053›Full record

ArticleCommunications medicine2024

A natural language processing approach to detect inconsistencies in death investigation notes attributing suicide circumstances.

Song Wang, Yiliang Zhou, Ziqiang Han, Cui Tao, Yunyu Xiao, Ying Ding, Joydeep Ghosh, Yifan Peng

Abstract read
In one paragraph

Article in Communications medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Comparing LLM and Fine-Tuned Model Performance on NVDRS Circumstance Extraction with Varying Prompt Complexity.Proceedings. IEEE International Conference on Healthcare Informatics · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Song WangCockrell School of Engineering, The University of Texas at Austin, Austin, TX, USA.ORCID http://orcid.org/0000-0002-8224-0424
Yiliang ZhouPopulation Health Sciences, Weill Cornell Medicine, New York, NY, USA.
Ziqiang HanSchool of Political Science and Public Administration, Shandong University, Qingdao, Shandong, China.
Cui TaoDepartment of AI and Informatics, Mayo Clinic, Jacksonville, FL, USA.ORCID http://orcid.org/0000-0002-4267-1924
Yunyu XiaoPopulation Health Sciences, Weill Cornell Medicine, New York, NY, USA.
Ying DingSchool of Information, The University of Texas at Austin, Austin, TX, USA.
Joydeep GhoshCockrell School of Engineering, The University of Texas at Austin, Austin, TX, USA.
Yifan PengPopulation Health Sciences, Weill Cornell Medicine, New York, NY, USA. yip4002@med.cornell.edu.ORCID http://orcid.org/0000-0001-9309-8331

Funding

AIM-AHEAD Coordinating Center - All Four CoresOT2OD032581 · OD · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI Paul Avillach, Bettina M. Beech · 2021 to 2026
$168.7M
Utilization of health services after engagement with opioid use disorder (OUD) treatment provider by individuals with and without post-traumatic stress disorderP30DA040500 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI Bruce R Schackman · 2015 to 2026
$20.7M
Dynamic learning for post-vaccine event prediction using temporal information in VAERSR01AI130460 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CHEN, YONG, TAO, CUI · 2017 to 2021
$3.4M
Facilitate Observational Studies of Alzheimer's Disease and Alzheimer's Disease-Related Dementias Using Ontology and Natural Language ProcessingRF1AG072799 · NIA · YALE UNIVERSITY · PI LIU, HONGFANG, TAO, CUI · 2021 to 2021
$2.4M
Facilitate Observational Studies of Alzheimer's Disease and Alzheimer's Disease-Related Dementias Using Ontology and Natural Language ProcessingR01AG072799 · NIA · YALE UNIVERSITY · PI HONGFANG LIU, Cui Tao · 2025 to 2026
$1.7M
NIAID NIH HHS R01 AI130460NIA NIH HHS R01 AG072799NIA NIH HHS RF1 AG072799NIDA NIH HHS P30 DA040500NIH HHS OT2 OD032581U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1R01AI130460U.S. Department of Health & Human Services | National Institutes of Health (NIH) OT2OD032581U.S. Department of Health & Human Services | National Institutes of Health (NIH) RF1AG072799U.S. Department of Health & Human Services | NIH | National Institute on Drug Abuse (NIDA) P30DA040500
6 · The paper itself

Abstract

backgroundData accuracy is essential for scientific research and policy development. The National Violent Death Reporting System (NVDRS) data is widely used for discovering the patterns and causing factors of death. Recent studies suggested the annotation inconsistencies within the NVDRS and the potential impact on erroneous suicide-circumstance attributions.

methodsWe present an empirical Natural Language Processing (NLP) approach to detect annotation inconsistencies and adopt a cross-validation-like paradigm to identify possible label errors. We analyzed 267,804 suicide death incidents between 2003 and 2020 from the NVDRS. We measured annotation inconsistency by the degree of changes in the F-1 score.

resultsOur results show that incorporating the target state's data into training the suicide-circumstance classifier brings an increase of 5.4% to the F-1 score on the target state's test set and a decrease of 1.1% on other states' test set.

conclusionsTo conclude, we present an NLP framework to detect the annotation inconsistencies, show the effectiveness of identifying and rectifying possible label errors, and eventually propose an improvement solution to improve the coding consistency of human annotators.

Identifiers

PMID39397053
PMCPMC11471859

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.