Evidence map›Paper›PMID 39395802›Full record

ArticleThe Journal of biological chemistry2024

Absence of the dolichol synthesis gene DHRSX leads to N-glycosylation defects in Lec5 and Lec9 Chinese hamster ovary cells.

Takfarinas Kentache, Charlotte R Althoff, Francesco Caligiore, Erika Souche, Céline Schulz, Julie Graff, Eline Pieters, Pamela Stanley, Joseph N Contessa, Emile Van Schaftingen and 4 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Takfarinas KentacheMetabolic Research Group, de Duve Institute & WELRI, Université Catholique de Louvain, Brussels, Belgium.
Charlotte R AlthoffLaboratory for Molecular Diagnosis, Center for Human Genetics, KU Leuven, Leuven, Belgium; Univ. Lille, CNRS, UMR 8576 - UGSF - Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France.
Francesco CaligioreMetabolic Research Group, de Duve Institute & WELRI, Université Catholique de Louvain, Brussels, Belgium.
Erika SoucheLaboratory for Cytogenetics and Genome Research, Department of Human Genetics, KU Leuven, Leuven, Belgium.
Céline SchulzUniv. Lille, CNRS, UMR 8576 - UGSF - Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France.
Julie GraffMetabolic Research Group, de Duve Institute & WELRI, Université Catholique de Louvain, Brussels, Belgium.
Eline PietersLaboratory for Molecular Diagnosis, Center for Human Genetics, KU Leuven, Leuven, Belgium.
Pamela StanleyDepartment of Cell Biology, Albert Einstein College of Medicine, New York, New York.
Joseph N ContessaDepartment of Therapeutic Radiology, Yale School of Medicine, New Haven, Connecticut; Department of Pharmacology, Yale School of Medicine, New Haven, Connecticut.
Emile Van SchaftingenMetabolic Research Group, de Duve Institute & WELRI, Université Catholique de Louvain, Brussels, Belgium.
Gert MatthijsLaboratory for Molecular Diagnosis, Center for Human Genetics, KU Leuven, Leuven, Belgium.
François FoulquierUniv. Lille, CNRS, UMR 8576 - UGSF - Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France.
Guido T BommerMetabolic Research Group, de Duve Institute & WELRI, Université Catholique de Louvain, Brussels, Belgium. Electronic address: guido.bommer@uclouvain.be.
Matthew P WilsonLaboratory for Molecular Diagnosis, Center for Human Genetics, KU Leuven, Leuven, Belgium. Electronic address: matthew.wilson@kuleuven.be.

Funding

Lectin Resistant Tumor Cells and Functional GlycomicsR01GM105399 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI STANLEY, PAMELA M · 2013 to 2022
$3.6M
OST Inhibition in NSCLCR01CA240418 · NCI · YALE UNIVERSITY · PI CONTESSA, JOSEPH N · 2020 to 2024
$2.4M
NCI NIH HHS R01 CA240418NIGMS NIH HHS R01 GM105399
6 · The paper itself

Abstract

Glycosylation-deficient Chinese hamster ovary cell lines have been instrumental in the discovery of N-glycosylation machinery. Yet, the molecular causes of the glycosylation defects in the Lec5 and Lec9 mutants have been elusive, even though for both cell lines a defect in dolichol formation from polyprenol was previously established. We recently found that dolichol synthesis from polyprenol occurs in three steps consisting of the conversion of polyprenol to polyprenal by DHRSX, the reduction of polyprenal to dolichal by SRD5A3, and the reduction of dolichal to dolichol, again by DHRSX. This led us to investigate defective dolichol synthesis in Lec5 and Lec9 cells. Both cell lines showed increased levels of polyprenol and its derivatives, concomitant with decreased levels of dolichol and derivatives, but no change in polyprenal levels, suggesting DHRSX deficiency. Accordingly, N-glycan synthesis and changes in polyisoprenoid levels were corrected by complementation with human DHRSX but not with SRD5A3. Furthermore, the typical polyprenol dehydrogenase and dolichal reductase activities of DHRSX were absent in membrane preparations derived from Lec5 and Lec9 cells, while the reduction of polyprenal to dolichal, catalyzed by SRD5A3, was unaffected. Long-read whole genome sequencing of Lec5 and Lec9 cells did not reveal mutations in the ORF of SRD5A3, but the genomic region containing DHRSX was absent. Lastly, we established the sequence of Chinese hamster DHRSX and validated that this protein has similar kinetic properties to the human enzyme. Our work therefore identifies the basis of the dolichol synthesis defect in Chinese hamster ovary Lec5 and Lec9 cells.

Indexed as

CricetulusDolichols3-Oxo-5-alpha-Steroid 4-DehydrogenaseAnimalsCHO CellsCricetinaeGlycosylationHumansMembrane Proteins3-Oxo-5-alpha-Steroid 4-DehydrogenaseDolicholsMembrane ProteinsSRD5A3 protein, humanCHO glycosylation mutantsdolicholglycobiologyglycoconjugateglycoprotein biosynthesisglycosylationisoprenoidlipid synthesisN-linked glycosylationpolyprenalpolyprenol

Identifiers

PMID39395802
PMCPMC11607601

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.