Evidence map›Paper›PMID 39395412›Full record

ArticleMed (New York, N.Y.)2025

Identification of distinct stool metabolites in women with endometriosis for non-invasive diagnosis and potential for microbiota-based therapies.

Chandni Talwar, Goutham Venkata Naga Davuluri, Abu Hena Mostafa Kamal, Cristian Coarfa, Sang Jun Han, Surabi Veeraragavan, Krishna Parsawar, Nagireddy Putluri, Kristi Hoffman, Patricia Jimenez and 2 more

Abstract read
In one paragraph

Article in Med (New York, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Microbiome and chronic pelvic pain in women: a mini-review.Human reproduction (Oxford, England) · 2026
    Review
  2. Identification of potent inhibitors of JUN N-terminal kinases for treatment of endometriosis and associated pain.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  14. Inhibition of Ferroptotic Toxicity by 4-Hydroxyindole.Chemical research in toxicology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Chandni TalwarDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA.
Goutham Venkata Naga DavuluriDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA.
Abu Hena Mostafa KamalAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA.
Cristian CoarfaAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA; Center for Precision and Environmental Health, Baylor College of Medicine, Houston, TX 77030, USA; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA.
Sang Jun HanDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Surabi VeeraragavanDepartment of Molecular Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Krishna ParsawarAnalytical and Biological Mass Spectrometry Core Facility, University of Arizona, Tucson, AZ 85721, USA.
Nagireddy PutluriAdvanced Technology Cores, Baylor College of Medicine, Houston, TX 77030, USA; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Kristi HoffmanAlkek Center for Metagenomics and Microbiome Research, Baylor College of Medicine, Houston, TX 77030, USA.
Patricia JimenezDivision of Reproductive Endocrinology and Infertility, Department of Obstetrics and Gynecology, Washington University School of Medicine, St Louis, MO 63110, USA.
Scott BiestDivision of Reproductive Endocrinology and Infertility, Department of Obstetrics and Gynecology, Washington University School of Medicine, St Louis, MO 63110, USA; Division of Minimally Invasive Gynecologic Surgery, Department of Obstetrics and Gynecology, Washington University School of Medicine, St Louis, MO 63110, USA.
Ramakrishna KommaganiDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA; Alkek Center for Metagenomics and Microbiome Research, Baylor College of Medicine, Houston, TX 77030, USA; Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address: Rama.Kommagani@bcm.edu.

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
Consortium for Broad Based Disease Phenotyping of Knockout MiceU54HG006348 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI BEAUDET, ARTHUR L., PAYLOR, RICHARD E · 2011 to 2015
$17.0M
Translational Research Support CoreP30ES030285 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Cheryl L. Walker · 2019 to 2026
$14.7M
Preclinical and Clincial OutcomesP50HD103555 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI Sandesh Chakravarthy Sreenath Nagamani, David Loren Nelson · 2020 to 2026
$9.9M
ROLE OF THE GUT MICROBIOTA IN ENDOMETRIOSISR01HD102680 · NICHD · WASHINGTON UNIVERSITY · PI Ramakrishna Kommagani · 2021 to 2026
$2.4M
Post-Transcriptional Regulation of Embryo ImplantationR01HD104813 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI Ramakrishna Kommagani · 2022 to 2026
$2.1M
Identify the DNA Adduct and Associated Metabolic Alterations in Bladder Cancer of SmokersR01CA216426 · NCI · BAYLOR COLLEGE OF MEDICINE · PI EL-ZEIN, RANDA A, PUTLURI, NAGIREDDY · 2018 to 2022
$2.0M
The Genomic Function of Estrogen Receptor Beta in EndometriosisR01HD098059 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI HAN, SANG JUN · 2020 to 2024
$1.9M
Racial Disparity in Bladder Cancer and Identification of Altered Metabolism in African American Compare to European Bladder CancerR01CA220297 · NCI · BAYLOR COLLEGE OF MEDICINE · PI PUTLURI, NAGIREDDY · 2017 to 2021
$1.8M
NCI NIH HHS P30 CA125123NCI NIH HHS R01 CA216426NCI NIH HHS R01 CA220297NHGRI NIH HHS U54 HG006348NICHD NIH HHS P50 HD103555NICHD NIH HHS R01 HD098059NICHD NIH HHS R01 HD102680NICHD NIH HHS R01 HD104813NIEHS NIH HHS P30 ES030285
6 · The paper itself

Abstract

backgroundEndometriosis, a poorly studied gynecological condition, is characterized by the presence of ectopic endometrial lesions resulting in pelvic pain, inflammation, and infertility. These associated symptoms contribute to a significant burden, often exacerbated by delayed diagnosis. Current diagnostic methods involve invasive procedures, and existing treatments provide no cure.

methodsMicrobiome-metabolome signatures in stool samples from individuals with and without endometriosis were determined using unbiased metabolomics and 16S bacteria sequencing. Functional studies for selected microbiota-derived metabolites were conducted in vitro using patient-derived cells and in vivo by employing murine and human xenograft pre-clinical disease models.

findingsWe discovered a unique bacteria-derived metabolite signature intricately linked to endometriosis. The altered fecal metabolite profile exhibits a strong correlation with that observed in inflammatory bowel disease (IBD), revealing intriguing connections between these two conditions. Notably, we validated 4-hydroxyindole, a gut-bacteria-derived metabolite that is lower in stool samples of endometriosis. Extensive in vivo studies found that 4-hydroxyindole suppressed the initiation and progression of endometriosis-associated inflammation and hyperalgesia in heterologous mouse and in pre-clinical models of the disease.

conclusionsOur findings are the first to provide a distinct stool metabolite signature in women with endometriosis, which could serve as stool-based non-invasive diagnostics. Further, the gut-microbiota-derived 4-hydroxyindole poses as a therapeutic candidate for ameliorating endometriosis.

fundingThis work was funded by the NIH/NICHD grants (R01HD102680, R01HD104813) and a Research Scholar Grant from the American Cancer Society to R.K.

Indexed as

EndometriosisFecesGastrointestinal MicrobiomeAdultAnimalsDisease Models, AnimalFecal Microbiota TransplantationFemaleHumansIndolesMetabolomeMetabolomicsMiceIndolesendometriosisgutinflammationmicrobiomemicrobiome therapeuticsnon-invasive diagnosispelvic painPre-clinical researchstool metabolites

Identifiers

PMID39395412
PMCPMC11830556

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.