Evidence map›Paper›PMID 39394863›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2024

Multi-omics characterization of lymphedema-induced adipose tissue resulting from breast cancer-related surgery.

Sinem Karaman, Satu Lehti, Cheng Zhang, Marja-Riitta Taskinen, Reijo Käkelä, Adil Mardinoglu, Håkan Brorson, Kari Alitalo, Riikka Kivelä

Abstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
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  11. Multi-omics characterization of lymphedema-induced adipose tissue resulting from breast cancer-related surgery.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sinem KaramanWihuri Research Institute, Helsinki, Finland.ORCID 0000-0002-0719-1773
Satu LehtiWihuri Research Institute, Helsinki, Finland.ORCID 0000-0002-9980-6201
Cheng ZhangScience for Life Laboratory, KTH-Royal Institute of Technology, Stockholm, Sweden.ORCID 0000-0002-3721-8586
Marja-Riitta TaskinenResearch Programs Unit, Clinical and Molecular Metabolism, University of Helsinki, Helsinki, Finland.ORCID 0000-0002-6229-3588
Reijo KäkeläHelsinki University Lipidomics Unit (HiLIPID), Helsinki Institute of Life Science (HiLIFE) and Biocenter Finland, Helsinki, Finland.ORCID 0000-0003-4953-3062
Adil MardinogluScience for Life Laboratory, KTH-Royal Institute of Technology, Stockholm, Sweden.ORCID 0000-0002-4254-6090
Håkan BrorsonDepartment of Clinical Sciences in Malmö, Lund University, Malmö, Sweden.ORCID 0000-0001-9968-6062
Kari AlitaloWihuri Research Institute, Helsinki, Finland.ORCID 0000-0002-7331-0902
Riikka KiveläWihuri Research Institute, Helsinki, Finland.ORCID 0000-0002-2686-8890

Funding

Cancerfonden (Swedish Cancer Society) CAN 2013/505Cancerfonden (Swedish Cancer Society) CAN 2016/639Fondation Leducq (Leducq Foundation) 11CVD03Maud Kuistilan Muistosäätiö (Maud Kuistila Foundation)Novo Nordisk Fonden (NNF) NNF16OC0023554Orion | Orionin Tutkimussäätiö (Orion Research Foundation)Research Council of Finland (AKA) 297245Research Council of Finland (AKA) 330053Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) P300PB_164732Sigrid Juséliuksen Säätiö (Sigrid Jusélius Stiftelse)Skåne County Council's Research and Development Foundation (Skane County Council's Research and Development Foundation) Project 2020-0460Skåne County Council's Research and Development Foundation (Skane County Council's Research and Development Foundation) REGSKANE-454091Skåne County Council's Research and Development Foundation (Skane County Council's Research and Development Foundation) REGSKANE-626131Skåne County Council's Research and Development Foundation (Skane County Council's Research and Development Foundation) REGSKANE-816751Sydäntutkimussäätiö (Finnish Foundation for Cardiovascular Research)University of HelsinkiWRI | Jenny ja Antti Wihurin Rahasto (Jenny JA Antti Wihurin Rahasto sr)
6 · The paper itself

Abstract

Secondary lymphedema (LE) following breast cancer-related surgery is a life-long complication, which currently has no cure. LE induces significant regional adipose tissue deposition, requiring liposuction as a treatment. Here, we aimed to elucidate the transcriptional, metabolomic, and lipidomic signature of the adipose tissue developed due to the surgery-induced LE in short- and long-term LE patients and compared the transcriptomic landscape of LE adipose tissue to the obesity-induced adipose tissue. Adipose tissue biopsies were obtained from breast cancer-operated females with LE from the affected and non-affected arms (n = 20 patients). To decipher the molecular properties of the LE adipose tissue, we performed RNA sequencing, metabolomics, and lipidomics combined with bioinformatics analyses. Differential gene expression data from a cohort of lean and obese patients without LE was used for comparisons. Integrative analysis of functional genomics revealed that inflammatory response, cell chemotaxis, and angiogenesis were upregulated biological processes in the LE arm, indicating a sustained inflammation in the edematous adipose tissue; whereas, epidermal differentiation, cell-cell junction organization, water homeostasis, and neurogenesis were downregulated in the LE arm. Surprisingly, only a few genes were found to be the same in the LE-induced and the obesity-induced adipose tissue expansion, indicating a different type of adipose tissue development in these two conditions. In metabolomics analysis, we found reduced levels of a branched-chain amino acid valine in the LE arm and downregulation of the mRNA levels of its transporter SLC6A15. Lipidomics analyses did not show any significant differences between the LE and non-LE arms, suggesting that other factors affect the lipid composition of the adipose tissue more than the LE in these patients. Our results provide a detailed molecular characterization of adipose tissue in secondary LE after breast cancer-related surgery. We also show distinct differences in transcriptomic signatures between LE-induced adipose tissue and obesity-induced adipose tissue, but only minor differences in metabolome and lipidome between the LE and the non-LE arm.

Indexed as

Adipose TissueBreast NeoplasmsLymphedemaAdultAgedFemaleHumansLipidomicsMetabolomicsMiddle AgedMultiomicsObesityTranscriptomeadipose‐depositionlipidomicsliposuctionlymphedemametabolomicstranscriptomics

Identifiers

PMID39394863
PMCPMC11580717

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.