Evidence map›Paper›PMID 39394783›Full record

ArticleJournal of dental research2024

Fumarate Restrains Alveolar Bone Restoration via Regulating H3K9 Methylation.

Y Y Zhang, J Xiang, Y Y He, X Liu, H Y Ye, L Xu, H L Bai, H Zhang, H M Zhang, W Z Liu and 3 more

Abstract read
In one paragraph

Article in Journal of dental research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Y Y ZhangCollege of Stomatology, Chongqing Medical University, Chongqing, China.
J XiangCollege of Stomatology, Chongqing Medical University, Chongqing, China.
Y Y HeCollege of Stomatology, Chongqing Medical University, Chongqing, China.
X LiuCollege of Stomatology, Chongqing Medical University, Chongqing, China.
H Y YeCollege of Stomatology, Chongqing Medical University, Chongqing, China.ORCID 0000-0002-9892-322X
L XuCollege of Stomatology, Chongqing Medical University, Chongqing, China.
H L BaiCollege of Stomatology, Chongqing Medical University, Chongqing, China.
H ZhangDepartment of Obstetrics and Gynaecology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
H M ZhangCollege of Stomatology, Chongqing Medical University, Chongqing, China.
W Z LiuCollege of Stomatology, Chongqing Medical University, Chongqing, China.
Q M ZhaiCollege of Stomatology, Chongqing Medical University, Chongqing, China.ORCID 0000-0001-6859-7411
P JiCollege of Stomatology, Chongqing Medical University, Chongqing, China.
R D CannonDepartment of Oral Sciences, Sir John Walsh Research Institute, Faculty of Dentistry, University of Otago, Dunedin, New Zealand.ORCID 0000-0002-5398-2066

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonresolving inflammation causes irreversible damage to periodontal ligament stem cells (PDLSCs) and impedes alveolar bone restoration. The impaired tissue regeneration ability of stem cells is associated with abnormal mitochondrial metabolism. However, the impact of specific metabolic alterations on the differentiation process of PDLSCs remains to be understood. In this study, we found that inflammation altered the metabolic flux of the tricarboxylic acid cycle and induced the accumulation of fumarate through metabolic testing and metabolic flux analysis. Transcriptome sequencing revealed the potential of fumarate in modulating epigenetics. Specifically, histone methylation typically suppresses the expression of genes related to osteogenesis. Fumarate was found to impede the osteogenic differentiation of PDLSCs that exhibited high levels of H3K9me3. Various techniques, including assay for transposase-accessible chromatin with high-throughput sequencing, chromatin immunoprecipitation sequencing, and RNA sequencing, were used to identify the target genes regulated by H3K9me3. Mechanistically, accumulated fumarate inhibited lysine-specific demethylase 4B (KDM4B) activity and increased H3K9 methylation, thus silencing asporin gene transcription. Preventing fumarate from binding to the histone demethylase KDM4B with α-ketoglutarate effectively restored the impaired osteogenic capacity of PDLSCs and improved alveolar bone recovery. Collectively, our research has revealed the significant impact of accumulated fumarate on the regulation of osteogenesis in stem cells, suggesting that inhibiting fumarate production could be a viable therapeutic approach for treating periodontal diseases.

Indexed as

Cell DifferentiationFumaratesHistonesJumonji Domain-Containing Histone DemethylasesOsteogenesisPeriodontal LigamentAlveolar ProcessAnimalsBone RegenerationCells, CulturedEpigenesis, GeneticHumansMethylationNerve Tissue ProteinsStem CellsFumaratesHistonesJumonji Domain-Containing Histone DemethylasesNerve Tissue Proteinscitric acid cyclehistonesinflammationmesenchymal stem cellsmetabolismosteogenesis

Identifiers

PMID39394783
PMCPMC11653348

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.