Evidence map›Paper›PMID 39394205›Full record

ArticleNature communications2024

Sea cucumbers and their symbiotic microbiome have evolved to feed on seabed sediments.

Wenjie Pan, Xuan Wang, Chunhua Ren, Xiao Jiang, Sanqiang Gong, Zhenyu Xie, Nai-Kei Wong, Xiaomin Li, Jiasheng Huang, Dingding Fan and 21 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Temperature Effect on Parasitism in Auricularia Larva of the Sea CucumberAnimals : an open access journal from MDPI · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Microorganisms · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Wenjie Pan *Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Xuan Wang *Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Chunhua Ren *Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Xiao JiangKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Sanqiang GongKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Zhenyu XieLaboratory of Marine Resource Utilization in the South China Sea, Hainan University, Haikou, China.
Nai-Kei WongClinical Pharmacology Section, Department of Pharmacology, Shantou University Medical College, Shantou, China.
Xiaomin LiKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.ORCID 0009-0005-0786-3903
Jiasheng HuangKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Dingding FanKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.ORCID 0000-0002-8201-3846
Peng LuoKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Yun YangLaboratory of Marine Resource Utilization in the South China Sea, Hainan University, Haikou, China.
Xinyue RenSchool of Life sciences and Biopharmaceutics, Guangdong Pharmaceutical University, Guangzhou, China.
Suzhong YuKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Zhou QinKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Xiaofen WuKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Da HuoKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Bo MaKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Yang LiuKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Xin ZhangKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Zixuan EKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Jingxuan LiangKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Hongyan SunGuangdong Laboratory for Lingnan Modern Agriculture, College of Marine Sciences, South China Agricultural University, Guangzhou, China.
Lihong YuanSchool of Life sciences and Biopharmaceutics, Guangdong Pharmaceutical University, Guangzhou, China.ORCID 0000-0002-8752-0572
Xujia LiuGuangxi Key Laboratory of Marine Environmental Science, Guangxi Academy of Marine Sciences, Guangxi Academy of Sciences, Nanning, China.
Chuhang ChengGuangxi Key Laboratory of Marine Environmental Science, Guangxi Academy of Marine Sciences, Guangxi Academy of Sciences, Nanning, China.
Hao LongLaboratory of Marine Resource Utilization in the South China Sea, Hainan University, Haikou, China.
Jianlong LiLaboratory of Marine Resource Utilization in the South China Sea, Hainan University, Haikou, China.
Yanhong WangKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Chaoqun HuKey Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
Ting ChenKey Laboratory of Breeding Biotechnology and Sustainable Aquaculture, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China. chan1010@scsio.ac.cn.ORCID 0000-0002-5777-909X

Funding

Administration of Ocean and Fisheries of Guangdong Province 2024-MRB-00-001Guangdong Science and Technology Department (Science and Technology Department, Guangdong Province) 2024A1515010899Guangdong Science and Technology Department (Science and Technology Department, Guangdong Province) 2024A1515011418Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2022YFD2401301National Natural Science Foundation of China (National Science Foundation of China) 41906101National Natural Science Foundation of China (National Science Foundation of China) 42176132Shanghai Educational Development Foundation HJWK-2021-21
6 · The paper itself

Abstract

Sea cucumbers are predominant deposit feeders in benthic ecosystems, providing protective benefits to coral reefs by reducing disease prevalence. However, how they receive sufficient nutrition from seabed sediments remains poorly understood. Here, we investigate Holothuria leucospilota, an ecologically significant tropical sea cucumber, to elucidate digestive mechanisms underlying marine deposit-feeding. Genomic analysis reveals intriguing evolutionary adaptation characterized by an expansion of digestive carbohydrase genes and a contraction of digestive protease genes, suggesting specialization in digesting microalgae. Developmentally, two pivotal dietary shifts, namely, from endogenous nutrition to planktonic feeding, and from planktonic feeding to deposit feeding, induce changes in digestive tract enzyme profiles, with adults mainly expressing carbohydrases and lipases. A nuanced symbiotic relationship exists between gut microbiota and the host, namely, specific resident bacteria supply crucial enzymes for food digestion, while other bacteria are digested and provide assimilable nutrients. Our study further identifies Holothuroidea lineage-specific lysozymes that are restrictedly expressed in the intestines to support bacterial digestion. Overall, this work advances our knowledge of the evolutionary innovations in the sea cucumber digestive system which enable them to efficiently utilize nutrients from seabed sediments and promote food recycling within marine ecosystems.

Indexed as

Gastrointestinal MicrobiomeGeologic SedimentsGlycoside HydrolasesSea CucumbersSymbiosisAnimalsBacteriaBiological EvolutionEcosystemFeeding BehaviorHolothuriaMicrobiotaPhylogenycarbohydraseGlycoside Hydrolases

Identifiers

PMID39394205
PMCPMC11470021

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.