Evidence map›Paper›PMID 39394194›Full record

ArticleNature communications2024

Zika viruses encode 5' upstream open reading frames affecting infection of human brain cells.

Charlotte Lefèvre, Georgia M Cook, Adam M Dinan, Shiho Torii, Hazel Stewart, George Gibbons, Alex S Nicholson, Liliana Echavarría-Consuegra, Luke W Meredith, Valeria Lulla and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Zika Virus: A Tale of Two Lineages.Pathogens (Basel, Switzerland) · 2025
    Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Charlotte LefèvreDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.ORCID 0000-0002-0762-7223
Georgia M CookDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.ORCID 0000-0003-1577-735X
Adam M DinanDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.ORCID 0000-0003-2812-1616
Shiho ToriiInstitut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France.
Hazel StewartDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.ORCID 0000-0003-1438-1089
George GibbonsJohn van Geest Centre for Brain Repair, University of Cambridge, Cambridge, UK.
Alex S NicholsonCambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.ORCID 0000-0002-5475-4874
Liliana Echavarría-ConsuegraDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.
Luke W MeredithDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.
Valeria LullaDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.ORCID 0000-0002-6605-0727
Naomi McGovernDivision of Immunology, Department of Pathology, University of Cambridge, Cambridge, UK.ORCID 0000-0001-5200-2698
Julia C KenyonDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.ORCID 0000-0001-6055-7052
Ian GoodfellowDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.ORCID 0000-0002-9483-510X
Janet E DeaneCambridge Institute for Medical Research, University of Cambridge, Cambridge, UK.ORCID 0000-0002-4863-0330
Stephen C GrahamDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.ORCID 0000-0003-4547-4034
András LakatosJohn van Geest Centre for Brain Repair, University of Cambridge, Cambridge, UK.ORCID 0000-0002-1301-2292
Louis LambrechtsInstitut Pasteur, Université Paris Cité, CNRS UMR2000, Insect-Virus Interactions Unit, Paris, France.ORCID 0000-0001-5958-2138
Ian BrierleyDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK.
Nerea IrigoyenDivision of Virology, Department of Pathology, University of Cambridge, Cambridge, UK. ni236@cam.ac.uk.ORCID 0000-0001-6346-3369

Funding

The regulatory functions of mini viral RNAs in influenza virus infectionsR21AI147172 · NIAID · UNIVERSITY OF CAMBRIDGE · PI IRIGOYEN, NEREA · 2019 to 2020
$231k
Isaac Newton Trust 18.40rNIAID NIH HHS R21 AI147172RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/V000306/1RCUK | Medical Research Council (MRC) MR/T000376/1Royal Society RGS\R1\191137Wellcome Trust 220620Wellcome Trust (Wellcome) 202797/Z/16/ZWellcome Trust (Wellcome) 203864/Z/16/ZWellcome Trust (Wellcome) 204464/Z/16/ZWellcome Trust (Wellcome) 219447/Z/19/ZWellcome Trust (Wellcome) 220620/Z/20/ZWellcome Trust (Wellcome) 227788/Z/23/Z
6 · The paper itself

Abstract

Zika virus (ZIKV), an emerging mosquito-borne flavivirus, is associated with congenital neurological complications. Here, we investigate potential pathological correlates of virus gene expression in representative ZIKV strains through RNA sequencing and ribosome profiling. In addition to the single long polyprotein found in all flaviviruses, we identify the translation of unrecognised upstream open reading frames (uORFs) in the genomic 5' region. In Asian/American strains, ribosomes translate uORF1 and uORF2, whereas in African strains, the two uORFs are fused into one (African uORF). We use reverse genetics to examine the impact on ZIKV fitness of different uORFs mutant viruses. We find that expression of the African uORF and the Asian/American uORF1 modulates virus growth and tropism in human cortical neurons and cerebral organoids, suggesting a potential role in neurotropism. Although the uORFs are expressed in mosquito cells, we do not see a measurable effect on transmission by the mosquito vector in vivo. The discovery of ZIKV uORFs sheds new light on the infection of the human brain cells by this virus and raises the question of their existence in other neurotropic flaviviruses.

Indexed as

BrainNeuronsOpen Reading FramesZika VirusZika Virus InfectionAnimalsChlorocebus aethiopsHumansMosquito VectorsOrganoidsRibosomesVero CellsViral TropismVirus Replication

Identifiers

PMID39394194
PMCPMC11470053

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.