Evidence map›Paper›PMID 39393128›Full record

ArticleComputers in biology and medicine2024

Machine learning interpretability methods to characterize the importance of hematologic biomarkers in prognosticating patients with suspected infection.

Dipak P Upadhyaya, Yasir Tarabichi, Katrina Prantzalos, Salman Ayub, David C Kaelber, Satya S Sahoo

Abstract read
In one paragraph

Article in Computers in biology and medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Development and Validation of an Early Risk Prediction Model for Sepsis-Induced Coagulopathy Based on Machine Learning.Clinical and applied thrombosis/hemostasis : official journal of the International Academy of Clinical and Applied Thrombosis/Hemostasis
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Dipak P UpadhyayaDepartment of Population and Quantitative Health Sciences, School of Medicine, Case Western Reserve University, Cleveland, OH, USA.
Yasir TarabichiDepartment of Population and Quantitative Health Sciences, School of Medicine, Case Western Reserve University, Cleveland, OH, USA; Center for Clinical Informatics Research and Education, MetroHealth System, Cleveland, OH, USA.
Katrina PrantzalosDepartment of Population and Quantitative Health Sciences, School of Medicine, Case Western Reserve University, Cleveland, OH, USA.
Salman AyubCenter for Clinical Informatics Research and Education, MetroHealth System, Cleveland, OH, USA.
David C KaelberDepartment of Population and Quantitative Health Sciences, School of Medicine, Case Western Reserve University, Cleveland, OH, USA; Center for Clinical Informatics Research and Education, MetroHealth System, Cleveland, OH, USA.
Satya S SahooDepartment of Population and Quantitative Health Sciences, School of Medicine, Case Western Reserve University, Cleveland, OH, USA. Electronic address: satya.sahoo@case.edu.

Funding

Clinical and Translational Science Collaborative of ClevelandUL1TR002548 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI MCCOMSEY, GRACE A · 2018 to 2022
$35.5M
Clinical and Translational Science Collaborative of Northern Ohio, Catalyzing Linkages to Equity in Health (CLE Health)UM1TR004528 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI GRACE A MCCOMSEY · 2023 to 2026
$32.1M
The Open EEGLAB Portal ProjectR01EB023297 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DELORME, ARNAUD, MAJUMDAR, AMITAVA · 2017 to 2020
$2.3M
Neuroscience Gateway to Enable Dissemination of Computational And Data Processing Tools And Software.U24EB029005 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MAJUMDAR, AMITAVA · 2019 to 2023
$2.2M
CRCNS:NeuroBridge: Connecting Big Data for Reproducible Clinical NeuroscienceR01DA053028 · NIDA · OHIO STATE UNIVERSITY · PI AMBITE, JOSE LUIS, RAJASEKAR, ARCOT · 2020 to 2023
$1.7M
NCATS NIH HHS UL1 TR002548NCATS NIH HHS UM1 TR004528NIBIB NIH HHS R01 EB023297NIBIB NIH HHS U24 EB029005NIDA NIH HHS R01 DA053028
6 · The paper itself

Abstract

objectiveTo evaluate the effectiveness of Monocyte Distribution Width (MDW) in predicting sepsis outcomes in emergency department (ED) patients compared to other hematologic parameters and vital signs, and to determine whether routine parameters could substitute MDW in machine learning models.

methodsWe conducted a retrospective analysis of data from 10,229 ED patients admitted to a large regional safety-net hospital in Cleveland, Ohio who had suspected infections and developed sepsis-associated poor outcomes. We developed a new analytical framework consisting of seven data models and an ensemble of high accuracy machine learning (ML) algorithms (accuracy values ranging from 0.83 to 0.90) to predict sepsis-associated poor outcomes (3-day intensive care unit stay or death). Local Interpretable Model-Agnostic Explanation (LIME) and Shapley Additive Value (SHAP) interpretability methods were utilized to assess the contributions of individual hematologic parameters.

resultsThe ML interpretability analysis indicated that the predictive value of MDW is significantly reduced when other hematological parameters and vital signs are considered. The results suggest that complete blood count with differential (CBD-DIFF) alongside vital signs can effectively replace MDW in high accuracy machine learning algorithms for screening poor outcome associated with sepsis.

conclusionMDW, although a newly approved biomarker for sepsis, does not significantly enhance prediction models when combined with routinely available parameters and vital signs. Hospitals, especially those with resource constraints, can rely on existing parameters with high accuracy machine learning models to predict sepsis outcomes effectively, thereby reducing the need for specialized tests like MDW.

Indexed as

BiomarkersMachine LearningSepsisAdultAgedFemaleHumansMaleMiddle AgedPrognosisRetrospective StudiesBiomarkersFeature importanceFeature interaction effectHematologic parameters and vital signsMachine learning interpretabilityMDW biomarkerSepsis screening

Identifiers

PMID39393128
PMCPMC11576231

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.