Evidence map›Paper›PMID 39392676›Full record

ArticleeLife2024

Regulatory genome annotation of 33 insect species.

Hasiba Asma, Ellen Tieke, Kevin D Deem, Jabale Rahmat, Tiffany Dong, Xinbo Huang, Yoshinori Tomoyasu, Marc S Halfon

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Dual-line Genome-scale CRISPR Screening Enables Robust Target Gene Discovery.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Mechanisms of transcriptional regulation inProceedings. Biological sciences · 2024
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hasiba AsmaProgram in Genetics, Genomics, and Bioinformatics, University at Buffalo-State University of New York, Buffalo, United States.ORCID https://orcid.org/0000-0002-9304-2685
Ellen TiekeDepartment of Biology, Miami University, Oxford, United States.
Kevin D DeemDepartment of Biology, Miami University, Oxford, United States.
Jabale RahmatDepartment of Biology, Miami University, Oxford, United States.
Tiffany DongDepartment of Biochemistry, University at Buffalo-State University of New York, Buffalo, United States.
Xinbo HuangDepartment of Biochemistry, University at Buffalo-State University of New York, Buffalo, United States.
Yoshinori TomoyasuDepartment of Biology, Miami University, Oxford, United States.ORCID https://orcid.org/0000-0001-9824-3454
Marc S HalfonProgram in Genetics, Genomics, and Bioinformatics, University at Buffalo-State University of New York, Buffalo, United States.ORCID https://orcid.org/0000-0002-4149-2705

Funding

REDfly: The regulatory sequence resource for Drosophila and other insectsU24GM142435 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI HALFON, MARC S · 2021 to 2023
$1.4M
Miami University Faculty Research Grants ProgramNational Institute of Food and Agriculture 2019-67013-29354National Science Foundation IOS-1557936NIGMS NIH HHS U24 GM142435NIH HHS U24 GM142435
6 · The paper itself

Abstract

Annotation of newly sequenced genomes frequently includes genes, but rarely covers important non-coding genomic features such as the

Indexed as

Genome, InsectInsectaMolecular Sequence AnnotationAnimalsComputational BiologyDatabases, GeneticEnhancer Elements, Geneticchromosomescis-regulationD. melanogasterenhancer predictionenhancersgene expressiongeneticsgenome annotationgenomicsinsectsregulatory genomics

Identifiers

PMID39392676
PMCPMC11469670

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.