Evidence map›Paper›PMID 39392366›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2024

CRISPR/Cas13 sgRNA-Mediated RNA-RNA Interaction Mapping in Live Cells with APOBEC RNA Editing.

Li-Ting Diao, Shu-Juan Xie, Wan-Yi Xu, Hai-Hui Zhang, Ya-Rui Hou, Yan-Xia Hu, Xin-Xiang Liang, Jun-Bin Liang, Qi Zhang, Zhen-Dong Xiao

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. CRISPR/Cas13 sgRNA-Mediated RNA-RNA Interaction Mapping in Live Cells with APOBEC RNA Editing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Li-Ting DiaoBiotherapy Center, The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510630, P. R. China.
Shu-Juan XieInstitute of Vaccine, The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510630, P. R. China.
Wan-Yi XuBiotherapy Center, The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510630, P. R. China.
Hai-Hui ZhangReforgene Medicine, Guangzhou, 510535, P. R. China.
Ya-Rui HouBiotherapy Center, The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510630, P. R. China.
Yan-Xia HuBiotherapy Center, The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510630, P. R. China.
Xin-Xiang LiangReforgene Medicine, Guangzhou, 510535, P. R. China.
Jun-Bin LiangReforgene Medicine, Guangzhou, 510535, P. R. China.
Qi ZhangBiotherapy Center, The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510630, P. R. China.
Zhen-Dong XiaoBiotherapy Center, The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510630, P. R. China.ORCID 0000-0003-1630-612X

Funding

National Natural Science Foundation of China 81974436National Natural Science Foundation of China 82273158National Natural Science Foundation of China 82472770Natural Science Foundation of Guangdong 2022A1515010704Program for Guangdong Introducing Innovative and Entrepreneurial Teams 2019ZT08Y485Science and Technology Projects in Guangzhou 2023A03J0204Science and Technology Projects in Guangzhou 2024A03J0176Science and Technology Projects in Guangzhou 2024A04J6571
6 · The paper itself

Abstract

Current research on long non-coding RNA (lncRNA) has predominantly focused on identifying their protein partners and genomic binding sites, leaving their RNA partners largely unknown. To address this gap, the study has developed a method called sarID (sgRNA scaffold assisted RNA-RNA interaction detection), which integrates Cas13-based RNA targeting, sgRNA engineering, and proximity RNA editing to investigate lncRNA-RNA interactomes. By applying sarID to the lncRNA NEAT1, over one thousand previously unidentified binding transcripts are discovered. sarID is further expanded to investigate binders of XIST, MALAT1, NBR2, and DANCR, demonstrating its broad applicability in identifying lncRNA-RNA interactions. The findings suggest that lncRNAs may regulate gene expression by interacting with mRNAs, expanding their roles beyond known functions as protein scaffolds, miRNA sponges, or guides for epigenetic modulators. sarID has the potential to be adapted for studying other specific RNAs, providing a novel immunoprecipitation-free method for uncovering RNA partners and facilitating the exploration of the RNA-RNA interactome.

Indexed as

CRISPR-Cas SystemsRNA EditingRNA, Long NoncodingAPOBEC DeaminasesHumansRNARNA, Guide, CRISPR-Cas SystemsAPOBEC DeaminasesRNARNA, Guide, CRISPR-Cas SystemsRNA, Long NoncodingdCas13lncRNAproximal labelingRNA editingRNA‐RNA interaction

Identifiers

PMID39392366
PMCPMC11615753

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.