Evidence map›Paper›PMID 39391879›Full record

ArticleFrontiers in endocrinology2024

Identification and validation of SHC1 and FGFR1 as novel immune-related oxidative stress biomarkers of non-obstructive azoospermia.

Yang Pan, Xiangyu Chen, Hang Zhou, Mingming Xu, Yuezheng Li, Qihua Wang, Zhunan Xu, Congzhe Ren, Li Liu, Xiaoqiang Liu

Abstract read
In one paragraph

Article in Frontiers in endocrinology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yang Pan *Department of Urology, Tianjin Medical University General Hospital, Tianjin, China.
Xiangyu Chen *Department of Urology, Tianjin Medical University General Hospital, Tianjin, China.
Hang Zhou *Department of Urology, Tianjin Medical University General Hospital, Tianjin, China.
Mingming Xu *Department of Urology, Tianjin Medical University General Hospital, Tianjin, China.
Yuezheng Li *Department of Urology, Tianjin Medical University General Hospital, Tianjin, China.
Qihua WangDepartment of Urology, Tianjin Medical University General Hospital, Tianjin, China.
Zhunan XuDepartment of Urology, Tianjin Medical University General Hospital, Tianjin, China.
Congzhe RenDepartment of Urology, Tianjin Medical University General Hospital, Tianjin, China.
Li LiuDepartment of Urology, Tianjin Medical University General Hospital, Tianjin, China.
Xiaoqiang LiuDepartment of Urology, Tianjin Medical University General Hospital, Tianjin, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Non-obstructive azoospermia (NOA) is a major contributor of male infertility. Herein, we used existing datasets to identify novel biomarkers for the diagnosis and prognosis of NOA, which could have great significance in the field of male infertility. Methods: NOA datasets were obtained from the Gene Expression Omnibus (GEO) database. CIBERSORT was utilized to analyze the distributions of 22 immune cell populations. Hub genes were identified by applying weighted gene co-expression network analysis (WGCNA), machine learning methods, and protein-protein interaction (PPI) network analysis. The expression of hub genes was verified in external datasets and was assessed by receiver operating characteristic (ROC) curve analysis. Gene set enrichment analysis (GSEA) was applied to explore the important functions and pathways of hub genes. The mRNA-microRNA (miRNA)-transcription factors (TFs) regulatory network and potential drugs were predicted based on hub genes. Single-cell RNA sequencing data from the testes of patients with NOA were applied for analyzing the distribution of hub genes in single-cell clusters. Furthermore, testis tissue samples were obtained from patients with NOA and obstructive azoospermia (OA) who underwent testicular biopsy. RT-PCR and Western blot were used to validate hub gene expression. Results: Two immune-related oxidative stress hub genes ( Conclusion: It appears that

Indexed as

AzoospermiaBiomarkersOxidative StressReceptor, Fibroblast Growth Factor, Type 1Src Homology 2 Domain-Containing, Transforming Protein 1AdultGene Expression ProfilingGene Regulatory NetworksHumansMaleProtein Interaction MapsTestisBiomarkersFGFR1 protein, humanReceptor, Fibroblast Growth Factor, Type 1SHC1 protein, humanSrc Homology 2 Domain-Containing, Transforming Protein 1immune cellmachine learningnon-obstructive azoospermiaoxidative stresssingle-cell RNA-seqWGCNA

Identifiers

PMID39391879
PMCPMC11466301

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.