Evidence map›Paper›PMID 39390580›Full record

ArticleWorld journal of surgical oncology2024

Unveiling ficolins: diagnostic and prognostic biomarkers linked to the Tumor Microenvironment in Lung Cancer.

Zeyu Zhang, Xueyan Geng, Maopeng Yin, Shoucai Zhang, Yingjie Liu, Dongmei Hu, Guixi Zheng

Abstract read
In one paragraph

Article in World journal of surgical oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zeyu ZhangDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, 250012, P.R. China.
Xueyan GengDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, 250012, P.R. China.
Maopeng YinDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, 250012, P.R. China.
Shoucai ZhangDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, 250012, P.R. China.
Yingjie LiuDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, 250012, P.R. China.
Dongmei HuCheeloo College of Medicine, Shandong University, Jinan, China.
Guixi ZhengDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, 250012, P.R. China. zhengg@sdu.edu.cn.

Funding

National Natural Science Foundation of China 82172347Natural Science Foundation of Shandong Province ZR2020MH323Taishan scholar program of Shandong Province tstp20221156
6 · The paper itself

Abstract

backgroundFicolins (FCNs) are a family of proteins, comprising FCN1, FCN2 and FCN3, and integral to the immune system which have been implicated in the onset and progression of tumors. Despite their recognized roles, a comprehensive analysis of FCNs in lung cancer remains elusive.

methodsWe employed a variety of bioinformatics tools, including UCSC, SangerBox, Ualcan, cBioPortal, String, Metascape, GeneMANIA, TIDE, CTD, and CAMP databases to investigate the differential expression, diagnostic and prognostic significance, genetic alterations, functional enrichment, immune infiltration, and potential immunotherapeutic implications of FCN1, FCN2, and FCN3 in lung squamous cell carcinoma (LUSC) and lung adenocarcinoma (LUAD). Additionally, RT-qPCR and immunohistochemistry were utilized to validate the expressions of FCNs at the mRNA and protein levels in LUSC and LUAD.

resultsOur comprehensive bioinformatic analysis, supported by RT-qPCR and immunohistochemistry, revealed that the expressions of FCN1, FCN2 and FCN3 were consistently downregulated in both LUSC and LUAD tumor tissues. FCNs demonstrated significant diagnostic potential for LUSC and LUAD, with the area under the receiver operating characteristic curve (AUC) for FCN1 and FCN3 exceeding 0.90. Furthermore, FCN2 and FCN3 showed a strong negative correlation with overall survival (OS) in LUSC, whereas FCN1 and FCN2 were positively correlated with OS in LUAD, suggesting their prognostic value in lung cancer. Gene enrichment analysis indicated that FCNs were predominantly associated with the complement system and complement activation pathways. Immune infiltration analysis further revealed a significant positive correlation between FCNs and the presence of neutrophils and resting mast cells. Our analysis of immunotherapy outcomes revealed a significant disparity in the immunophenoscore (IPS) among lung cancer patients treated with immune checkpoint inhibitors (ICIs), distinguishing those with high FCN expression from those with low FCN expression. Additionally, we identified small molecule compounds related to FCNs and drugs pertinent to LUSC and LUAD.

conclusionFCNs held promise as diagnostic and prognostic biomarkers for LUSC and LUAD. This study also elucidated the relationship of FCNs with the tumor microenvironment, offering novel insights into the immunotherapeutic landscape for LUSC and LUAD.

Indexed as

Biomarkers, TumorLung NeoplasmsTumor MicroenvironmentAdenocarcinoma of LungCarcinoma, Squamous CellComputational BiologyGene Expression Regulation, NeoplasticHumansLectinsPrognosisSurvival RateBiomarkers, TumorLectinsDiagnosisFicolinImmune InfiltrationImmunotherapyLUADLUSCPrognosis

Identifiers

PMID39390580
PMCPMC11468453

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.