Evidence map›Paper›PMID 39390418›Full record

ArticleBMC microbiology2024

Rapid growth rate of Enterobacter sp. SM3 determined using several methods.

Sophie Pollack-Milgate, Sanchi Saitia, Jay X Tang

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in BMC microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Characterization and pathogenic mechanisms of aFrontiers in microbiology · 2026
    Article
  3. Copper-induced stress mechanisms inApplied and environmental microbiology · 2025
    Article
  4. In Vitro Infection of Human Macrophages withInternational journal of molecular sciences · 2025
    Article
  5. TheFrontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sophie Pollack-MilgateDepartment of Physics, Brown University, 182 Hope Street, Providence, RI, 02912, USA.
Sanchi SaitiaDepartment of Physics, Brown University, 182 Hope Street, Providence, RI, 02912, USA.
Jay X TangDepartment of Physics, Brown University, 182 Hope Street, Providence, RI, 02912, USA. Jay_Tang@Brown.edu.

Funding

Nartional Science Foundation (US) NSF DMR 2207284
6 · The paper itself

Abstract

backgroundBacterial growth rate, commonly reported in terms of doubling time, is frequently determined by one of two techniques: either by measuring optical absorption of a growing culture or by taking samples at different times during their growth phase, diluting them, spreading them on agar plates, incubating them, and counting the colonies that form. Both techniques require measurements of multiple repeats, as well careful assessment of reproducibility and consistency. Existing literature using either technique gives a wide range of growth rate values for even the most extensively studied species of bacteria, such as Escherichia coli, Pseudomonas aeruginosa, and  Staphylococcus aureus. This work aims to apply several methods to reliably determine the growth rate of a recently identified species of Enterobacteriaceae, called Enterobacter sp. SM3, and to compare that rate with that of a well-known wildtype E. coli strain KP437.

resultsWe extend conventional optical density (OD) measurements to determine the growth rate of Enterobacter sp. SM3. To assess the reliability of this technique, we compare growth rates obtained by fitting the OD data to exponential growth, applying a relative density method, and measuring shifts in OD curves following set factors of dilution. The main source of error in applying the OD technique is due to the reliance on an exponential growth phase with a short span. With proper choice of parameter range, however, we show that these three methods yield consistent results. We also measured the SM3 division rate by counting colony-forming units (CFU) versus time, yielding results consistent with the OD measurements. In lysogeny broth at 37

conclusionThe main conclusion of this report is that conventional optical density (OD) measurements and the colony-forming units (CFU) method can yield consistent values of bacterial growth rate. However, to ensure the reproducibility and reliability of the measured growth rate of each bacterial strain, different methods ought to be applied in close comparison. The effort of checking for consistency among multiple techniques, as we have done in this study, is necessary to avoid reporting variable values of doubling time for particular species or strains of bacteria, as seen in the literature.

Indexed as

EnterobacterBacteriological TechniquesColony Count, MicrobialEscherichia coliReproducibility of ResultsActivation phaseColony-forming unitDoubling timeEnterobacteriaExponential growthGrowth rateGut microbiomeLag phaseOptical absorbancePlaque forming unit

Identifiers

PMID39390418
PMCPMC11465882

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.