ArticleScientific data2024
An ontology-based text mining dataset for extraction of process-structure-property entities.
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
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Who cites it
6 citing papers in PubMed.
- A text mining and ontology-based approach using phenotypes to obtain relevant literature for rare diseases.iScience · 2026Article
- OntoCodex: a multi-agent biomedical ontology enrichment framework.npj health systems · 2026Article
- Enhancing amharic news classification through ontology-based feature fusion and logistic regression.Scientific reports · 2026Article
- A systematical procedure to extracting legal entities from Indonesian judicial decisions.MethodsX · 2025Article
- Ontology-conformal recognition of materials entities using language models.Scientific reports · 2025Article
- Integrating graph convolutional networks with large language models for structured biomedical material knowledge representation.Regenerative biomaterials · 2025Article
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
While large language models learn sound statistical representations of the language and information therein, ontologies are symbolic knowledge representations that can complement the former ideally. Research at this critical intersection relies on datasets that intertwine ontologies and text corpora to enable training and comprehensive benchmarking of neurosymbolic models. We present the MaterioMiner dataset and the linked materials mechanics ontology where ontological concepts from the mechanics of materials domain are associated with textual entities within the literature corpus. Another distinctive feature of the dataset is its eminently fine-grained annotation. Specifically, 179 distinct classes are manually annotated by three raters within four publications, amounting to 2191 entities that were annotated and curated. Conceptual work is presented for the symbolic representation of causal composition-process-microstructure-property relationships. We explore the annotation consistency between the three raters and perform fine-tuning of pre-trained language models to showcase the feasibility of training named entity recognition models. Reusing the dataset can foster training and benchmarking of materials language models, automated ontology construction, and knowledge graph generation from textual data.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.