Evidence map›Paper›PMID 39389956›Full record

ArticleScientific data2024

Three genome assemblies of Opsariichthys bidens from Yangzte River, Pearl River and Qiantang River basins.

Xiaojun Xu, Xinhui Zhang, Wenzhi Guan, Jiongying Yu, Baolong Niu, Shaokui Yi, Bao Lou

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Characterization of the complete mitochondrial genome sequence ofMitochondrial DNA. Part B, Resources · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaojun Xu *State Key laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Hydrobiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Xinhui Zhang *College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Wenzhi GuanState Key laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Hydrobiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Jiongying YuSchool of Life Sciences, Huzhou University, Huzhou, China.
Baolong NiuState Key laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Hydrobiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Shaokui YiSchool of Life Sciences, Huzhou University, Huzhou, China. yishaokui@foxmail.com.
Bao LouState Key laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Hydrobiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, China. loubao6577@163.com.

Funding

Natural Science Foundation of Zhejiang Province (Zhejiang Provincial Natural Science Foundation) Grant No. LTGS23C040001
6 · The paper itself

Abstract

Opsariichthys bidens is an endemic minnow, mainly distributed in China as an emerging aquaculture species. In this study, O. bidens collected from Yangzte River (YR), Pearl River (PR) and Qiantang River (QR) basins were used for karyotypic study and genome sequencing. Using PacBio long reads and Hi-C data, we assembled high-quality O. bidens genomes of 852.41 Mb (YR), 843.11 Mb (PR) and 840.94 Mb (QR) with scaffold N50 lengths of 21.01 Mb, 23.62 Mb and 24.75 Mb, respectively, of which 90.39%, 95.67% and 99.01% were anchored to 37, 38 and 39 chromosomes, respectively. 26,556 (YR), 25,036 (PR) and 26,283 (QR) protein-coding genes were predicted, respectively. The karyotype of O. bidens from YR, PR and QR were 2 N = 74 (6 m + 6sm + 4st + 58t), 2 N = 76 (4 m + 6sm + 4st + 62t) and 2 N = 78 (4 m + 4sm + 4st + 66t), respectively. Collinearity analysis and telomere predictions indicated that the observed chromosomal evolution was driven by Robertsonian translocation. These genome assemblies facilitate cryptic species determination, evolutionary study and genetic breeding of genus Opsariichthys.

Indexed as

GenomeRiversAnimalsChinaCyprinidaeKaryotype

Identifiers

PMID39389956
PMCPMC11467170

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