Evidence map›Paper›PMID 39388485›Full record

ArticlePloS one2024

Transcriptome profiling of two rice varieties reveals their molecular responses under high night-time temperature.

Wardah K Mustahsan, Yuya Liang, Abdul R Mohammed, Charles D Johnson, Endang M Septiningsih, Lee Tarpley, Michael J Thomson

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Wardah K MustahsanDepartment of Soil and Crop Sciences, Texas A&M University, College Station, Texas, Unted States of America.
Yuya LiangDepartment of Soil and Crop Sciences, Texas A&M University, College Station, Texas, Unted States of America.
Abdul R MohammedTexas A&M Agrilife Research & Extension Center, Beaumont, Texas, Unted States of America.
Charles D JohnsonGenomics and Bioinformatics Service, Texas A&M AgriLife Research, College Station, Texas, Unted States of America.
Endang M SeptiningsihDepartment of Soil and Crop Sciences, Texas A&M University, College Station, Texas, Unted States of America.
Lee TarpleyTexas A&M Agrilife Research & Extension Center, Beaumont, Texas, Unted States of America.
Michael J ThomsonDepartment of Soil and Crop Sciences, Texas A&M University, College Station, Texas, Unted States of America.ORCID 0000-0003-1868-6867

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High night-time temperatures (HNT) pose a threat to the sustainability of crop production, including rice. HNT can affect crop productivity and quality by influencing plant physiology, morphology, and phenology. The ethylene perception inhibitor, 1-methylcyclopropene (1-MCP), can minimize HNT-induced damage to plant membranes, thereby preventing decrease in rice yield. In this study, we employed a transcriptome approach to investigate the effects of HNT, 1-MCP, and their interaction on two Texas rice varieties, Antonio and Colorado. The plants were exposed to temperatures of 25°C (ambient night-time temperature, ANT) and 30°C (HNT) using an infrared heating system from the booting stage until harvest, while 1-MCP was applied at the booting stage of rice development. Several physiological and agronomical traits were evaluated under each condition to assess plant responses. Leaf tissues were collected from the plants grown in the ANT and HNT conditions after the heat stress and 1-MCP treatments. Based on agronomic performance, Colorado was less negatively affected than Antonio under HNT, showing a slight reduction in spikelet fertility and leaf photosynthetic rate but no significant reduction in yield. The application of 1-MCP significantly mitigated the adverse effects of HNT in Antonio. However, no significant differences were observed in yield and leaf photosynthetic rate in Colorado. Furthermore, transcriptomic data revealed distinct responsive mechanisms in Antonio and Colorado in response to both HNT and 1-MCP. Several ethylene and senescence-related transcription factors (TFs) were identified only in Antonio, suggesting that 1-MCP affected the ethylene signaling pathway in Antonio but not in Colorado. These findings contribute to our understanding of the physiological differences between varieties exhibiting susceptible and tolerant responses to high night-time temperatures, as well as their response to 1-MCP and ethylene regulation under 1-MCP.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantOryzaCyclopropanesHot TemperaturePhotosynthesisPlant LeavesPlant ProteinsTemperatureTranscriptome1-methylcyclopropeneCyclopropanesPlant Proteins

Identifiers

PMID39388485
PMCPMC11466396

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.