Evidence map›Paper›PMID 39388343›Full record

ArticleACS nano2024

Resolving Sulfation Posttranslational Modifications on a Peptide Hormone using Nanopores.

Xiuqi Chen, Jasper W van de Sande, Justas Ritmejeris, Chenyu Wen, Henry Brinkerhoff, Andrew H Laszlo, Bauke Albada, Cees Dekker

Abstract read
In one paragraph

Article in ACS nano, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Xiuqi ChenDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft 2629 HZ, The Netherlands.ORCID 0000-0003-1157-3501
Jasper W van de SandeLaboratory of Organic Chemistry, Wageningen University & Research, Wageningen 6807 WE, The Netherlands.ORCID 0000-0002-4483-5056
Justas RitmejerisDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft 2629 HZ, The Netherlands.
Chenyu WenDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft 2629 HZ, The Netherlands.ORCID 0000-0003-4395-7905
Henry BrinkerhoffDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.
Andrew H LaszloDepartment of Physics, University of Washington, Seattle, Washington 98195, United States.ORCID 0000-0002-7853-0533
Bauke AlbadaLaboratory of Organic Chemistry, Wageningen University & Research, Wageningen 6807 WE, The Netherlands.ORCID 0000-0003-3659-2434
Cees DekkerDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft 2629 HZ, The Netherlands.ORCID 0000-0001-6273-071X

Funding

Towards Single-Molecule Protein Sequencing with NanoporesR01HG012544 · NHGRI · UNIVERSITY OF WASHINGTON · PI DEKKER, CEES, GUNDLACH, JENS · 2022 to 2024
$1.7M
European Research Council 883684NHGRI NIH HHS R01 HG012544
6 · The paper itself

Abstract

Peptide hormones are decorated with post-translational modifications (PTMs) that are crucial for receptor recognition. Tyrosine sulfation on plant peptide hormones is, for example, essential for plant growth and development. Measuring the occurrence and position of sulfotyrosine is, however, compromised by major technical challenges during isolation and detection. Nanopores can sensitively detect protein PTMs at the single-molecule level. By translocating PTM variants of the plant pentapeptide hormone phytosulfokine (PSK) through a nanopore, we here demonstrate the accurate identification of sulfation and phosphorylation on the two tyrosine residues of PSK. Sulfation can be clearly detected and distinguished (>90%) from phosphorylation on the same residue. Moreover, the presence or absence of PTMs on the two close-by tyrosine residues can be accurately determined (>96% accuracy). Our findings demonstrate the extraordinary sensitivity of nanopore protein measurements, providing a powerful tool for identifying position-specific sulfation on peptide hormones and promising wider applications to identify protein PTMs.

Indexed as

NanoporesPeptide HormonesProtein Processing, Post-TranslationalPhosphorylationSulfatesTyrosinePeptide HormonesSulfatesTyrosinenanoporepeptide fingerprintingplant peptide hormonepost-translational modificationssingle-molecule technique

Identifiers

PMID39388343
PMCPMC11503906

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.