Evidence map›Paper›PMID 39386538›Full record

ArticlebioRxiv : the preprint server for biology2024

Zebrafish Polymerase Theta and human Polymerase Theta: orthologues with homologous function.

Corey Thomas, Sydney Green, Lily Kimball, Isaiah R Schmidtke, Makayla Griffin, Lauren Rothwell, Ivy Par, Sophia Schobel, Yayleene Palacio, Jamie B Towle-Weicksel and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Sequencing-based analysis of microbiomes.Nature reviews. Genetics · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Corey ThomasDepartment of Physical Sciences, Rhode Island College, Providence, RI.
Sydney GreenDepartment of Physical Sciences, Rhode Island College, Providence, RI.
Lily KimballDepartment of Biology and Biological Sciences, Bryant University, Smithfield RI.
Isaiah R SchmidtkeDepartment of Biology and Biological Sciences, Bryant University, Smithfield RI.
Makayla GriffinDepartment of Biology and Biological Sciences, Bryant University, Smithfield RI.
Lauren RothwellDepartment of Biology and Biological Sciences, Bryant University, Smithfield RI.
Ivy ParDepartment of Physical Sciences, Rhode Island College, Providence, RI.
Sophia SchobelDepartment of Physical Sciences, Rhode Island College, Providence, RI.
Yayleene PalacioDepartment of Physical Sciences, Rhode Island College, Providence, RI.
Jamie B Towle-WeickselDepartment of Physical Sciences, Rhode Island College, Providence, RI.
Steven E WeickselDepartment of Biology and Biological Sciences, Bryant University, Smithfield RI.ORCID 0000-0002-1679-9684

Funding

Training CoreP20GM103430 · NIGMS · UNIVERSITY OF RHODE ISLAND · PI Bongsup P Cho · 2012 to 2026
$63.6M
Uncovering the Mechanistic Role of DNA Pol Theta in UV-Damage RepairR15GM144903 · NIGMS · RHODE ISLAND COLLEGE · PI TOWLE-WEICKSEL, JAMIE B. · 2021 to 2021
$392k
NIGMS NIH HHS P20 GM103430NIGMS NIH HHS R15 GM144903
6 · The paper itself

Abstract

DNA Polymerase Theta (Pol θ) is a conserved an A-family polymerase that plays an essential role in repairing double strand breaks, through micro-homology end joining, and bypassing DNA lesions, through translesion synthesis, to protect genome integrity. Despite its essential role in DNA repair, Pol θ is inherently error-prone. Recently, key loop regions were identified to play an important role in key functions of Pol θ. Here we present a comparative structure-function study of the polymerase domain of zebrafish and human Pol θ. We show that these two proteins share a large amount of sequence and structural homology. However, we identify differences in the amino acid composition within the key loop areas shown to drive characteristic Pol θ functions. Despite these differences zebrafish Pol θ still displays characteristics identify in human Pol θ, including DNA template extension in the presence of different divalent metals, microhomology-mediated end joining, and translesion synthesis. These results will support future studies looking to gain insight into Pol θ function on the basis of evolutionarily conserved features.

Identifiers

PMID39386538
PMCPMC11463350

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.