Evidence map›Paper›PMID 39386471›Full record

ArticlebioRxiv : the preprint server for biology2024

A Collagen Triple Helix without the Super Helical Twist.

Mark A B Kreutzberger, Le Tracy Yu, Maria C Hancu, Michael D Purdy, Tomasz Osinski, Peter Kasson, Edward H Egelman, Jeffrey D Hartgerink

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Mark A B KreutzbergerDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, 22903, USA.ORCID 0000-0002-1269-2089
Le Tracy YuDepartment of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA.ORCID 0000-0003-3054-8512
Maria C HancuDepartment of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA.
Michael D PurdyMolecular Electron Microscopy Core, University of Virginia School of Medicine, Charlottesville, VA, 22903, USA.
Tomasz OsinskiCenter for Advanced Research Computing, University of Southern California, Los Angeles, CA 90089.ORCID 0000-0001-9933-346X
Peter KassonDepartments of Chemistry & Biochemistry and Biomedical Engineering, Georgia Institute of Technology, Atlanta, GA 30332.ORCID 0000-0002-3111-8103
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, 22903, USA.ORCID 0000-0003-4844-5212
Jeffrey D HartgerinkDepartment of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA.ORCID 0000-0002-3186-5395

Funding

Cryo-EM of Helical Protein and Nucleoprotein Polymers at Near Atomic ResolutionR35GM122510 · NIGMS · UNIVERSITY OF VIRGINIA · PI EDWARD H. EGELMAN · 2017 to 2026
$7.3M
Simulation-guided spectroscopy and refinement of heterogenous conformational ensemblesR01GM138444 · NIGMS · UNIVERSITY OF VIRGINIA · PI KASSON, PETER M · 2021 to 2024
$1.4M
NIGMS NIH HHS R01 GM138444NIGMS NIH HHS R35 GM122510
6 · The paper itself

Abstract

Collagens are ubiquitous in biology functioning as the backbone of the extracellular matrix, forming the primary structural components of key immune system complexes, and fulfilling numerous other structural roles in a variety of systems. Despite this, there is limited understanding of how triple helices, the basic collagen structural units, pack into collagenous assemblies. Here we use a peptide self-assembly system to design collagenous assemblies based on the C1q collagen-like region. Using cryo-EM we solve a structure of one assembly to 3.5 Å resolution and build an atomic model. From this, we identify a triple helix conformation with no superhelical twist, starkly in contrast to the canonical right-handed triple helix. This non-twisting region allows for unique hydroxyproline stacking between adjacent triple helices and also results in the formation of an exposed cavity with rings of hydrophobic amino acids packed symmetrically. We find no precedent for such an arrangement of collagen triple helices and have designed mutant assemblies to probe key stabilizing amino acid interactions in the complex. The mutations behave as predicted by our atomic model. Our findings, combined with the extremely limited experimental structural data on triple helix packing in the literature, suggest that collagen and collagen-like assemblies may adopt a far more varied conformational landscape than previously appreciated. We hypothesize that this is particularly likely adjacent to the termini of these helices and at discontinuities to the required Xaa-Yaa-Gly repeating primary sequence; a discontinuity found in the majority of this class of proteins and in many collagen-associated diseases.

Identifiers

PMID39386471
PMCPMC11463431

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.