Evidence map›Paper›PMID 39385008›Full record

ArticleNature biotechnology2025

A circularly permuted CasRx platform for efficient, site-specific RNA editing.

Yuanming Wang, Kaiwen Ivy Liu, Mengying Mandy Liu, Kean Hean Ooi, Tram Anh Nguyen, Jiunn En Chee, Shun Xiang Danny Teo, Shan He, Jie Wen Douglas Tay, Seok Yee Teo and 13 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. A pig with functional human immunity.Nature biomedical engineering · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Emerging clinical applications of ADAR based RNA editing.Stem cells translational medicine · 2025
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Yuanming Wang *School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Kaiwen Ivy Liu *School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Mengying Mandy Liu *School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Kean Hean Ooi *School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Tram Anh NguyenSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.ORCID http://orcid.org/0000-0002-4275-3858
Jiunn En CheeSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.ORCID http://orcid.org/0000-0002-5130-0869
Shun Xiang Danny TeoSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Shan HeGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, Singapore.
Jie Wen Douglas TaySchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.ORCID http://orcid.org/0000-0002-0523-3490
Seok Yee TeoSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Kai Shin LiewSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Xiao Yu GeSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Zhi Jian NgSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Hasmik AvagyanSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Hao LiuSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Zirong YiSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore.
Keziah ChangGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, Singapore.
Eng Piew Louis KokGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, Singapore.
Runjia ChenGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, Singapore.ORCID http://orcid.org/0000-0002-2041-6332
Chun En YauGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, Singapore.ORCID http://orcid.org/0000-0002-5844-8962
Jun Wei KohGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, Singapore.
Yue WanGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, Singapore.ORCID http://orcid.org/0000-0002-2433-9637
Meng How TanSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore, Singapore. mh.tan@ntu.edu.sg.ORCID http://orcid.org/0000-0003-3627-5586

Funding

Ministry of Education - Singapore (MOE) RG50/17Ministry of Education - Singapore (MOE) T2EP30223-0028MOH | National Medical Research Council (NMRC) NMRC/OFIRG/0017/2016National Research Foundation Singapore (National Research Foundation-Prime Minister's office, Republic of Singapore) NRF2017-NRF-ISF002-2673National Research Foundation Singapore (National Research Foundation-Prime Minister's office, Republic of Singapore) SSG 2021-03
6 · The paper itself

Abstract

Inactive Cas13 orthologs have been fused to a mutant human ADAR2 deaminase domain at the C terminus to enable programmable adenosine-to-inosine (A-to-I) RNA editing in selected transcripts. Although promising, existing RNA-editing tools generally suffer from a trade-off between efficacy and specificity, and off-target editing remains an unsolved problem. Here we describe the development of an optimized RNA-editing platform by rational protein engineering, CasRx-based Programmable Editing of RNA Technology (xPERT). We demonstrate that the topological rearrangement of a CasRx K940L mutant by circular permutation results in a robust scaffold for the tethering of a deaminase domain. We benchmark our tool against the REPAIR system and show that xPERT exhibits strong on-target activity like REPAIRv1 but low off-target editing like REPAIRv2. Our xPERT platform can be used to alter RNA sequence information without risking genome damage, effect temporary cellular changes and customize protein function.

Indexed as

CRISPR-Associated ProteinsCRISPR-Cas SystemsProtein EngineeringRNA EditingAdenosine DeaminaseHEK293 CellsHumansRNA-Binding ProteinsAdenosine DeaminaseCRISPR-Associated ProteinsRNA-Binding Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.