Evidence map›Paper›PMID 39385007›Full record

ArticleNature biotechnology2025

One-step nanoscale expansion microscopy reveals individual protein shapes.

Ali H Shaib, Abed Alrahman Chouaib, Rajdeep Chowdhury, Jonas Altendorf, Daniel Mihaylov, Chi Zhang, Donatus Krah, Vanessa Imani, Russell K W Spencer, Svilen Veselinov Georgiev and 28 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Nanorulers for Super-Resolution Microscopy.Chembiochem : a European journal of chemical biology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Thousandfold Expansion Microscopy.bioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. The Fantastic Single-Molecule Techniques.Chemical & biomedical imaging · 2026
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Principles ofbioRxiv : the preprint server for biology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Ali H ShaibInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany. ali.shaib@med.uni-goettingen.de.
Abed Alrahman ChouaibDepartment of Cellular Neurophysiology, Center for Integrative Physiology and Molecular Medicine (CIPMM), Saarland University, Homburg, Germany.
Rajdeep ChowdhuryInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Jonas AltendorfInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.ORCID http://orcid.org/0009-0003-2515-8330
Daniel MihaylovMRC Laboratory of Molecular Biology, Cambridge, UK.
Chi ZhangDepartment of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA.
Donatus KrahInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Vanessa ImaniInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Russell K W SpencerInstitute for Theoretical Physics, Georg-August University, Göttingen, Germany.ORCID http://orcid.org/0000-0002-4814-9010
Svilen Veselinov GeorgievInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Nikolaos MougiosInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Mehar MongaBiochemistry of Membrane Dynamics Group, Institute for Auditory Neuroscience, University Medical Center Göttingen, Göttingen, Germany.
Sofiia ReshetniakInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.ORCID http://orcid.org/0000-0003-4847-4144
Tiago MimosoInstitute for X-Ray Physics, University of Göttingen, Göttingen, Germany.
Han ChenInstitute for Auditory Neuroscience and InnerEarLab, University Medical Center Göttingen, Göttingen, Germany.ORCID http://orcid.org/0009-0003-1357-5161
Parisa FatehbasharzadInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Dagmar CrzanInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Kim-Ann SaalInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Mohamad Mahdi AlawiehInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.
Nadia AlawarDepartment of Cellular Neurophysiology, Center for Integrative Physiology and Molecular Medicine (CIPMM), Saarland University, Homburg, Germany.ORCID http://orcid.org/0000-0002-8591-2513
Janna EiltsDepartment of Biotechnology and Biophysics, Biocenter, University of Würzburg, Am Hubland, Würzburg, Germany.
Jinyoung KangDepartment of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA.
Alireza SoleimaniInstitute for Theoretical Physics, Georg-August University, Göttingen, Germany.
Marcus MüllerInstitute for Theoretical Physics, Georg-August University, Göttingen, Germany.ORCID http://orcid.org/0000-0002-7472-973X
Constantin PapeInstitute of Computer Science, Georg-August University Göttingen, Göttingen, Germany.ORCID http://orcid.org/0000-0001-6562-7187
Luis AlvarezLeica Microsystems CMS GmbH, Mannheim, Germany.ORCID http://orcid.org/0000-0003-1316-1906
Claudia TrenkwalderDepartment of Neurosurgery, University Medical Center, Göttingen, Germany.
Brit MollenhauerParacelsus-Elena-Klinik, Kassel, Germany.
Tiago F OuteiroDepartment of Experimental Neurodegeneration, Center for Biostructural Imaging of Neurodegeneration, University Medical Center Göttingen, Göttingen, Germany.ORCID http://orcid.org/0000-0003-1679-1727
Sarah KösterInstitute for X-Ray Physics, University of Göttingen, Göttingen, Germany.
Julia PreobraschenskiBiochemistry of Membrane Dynamics Group, Institute for Auditory Neuroscience, University Medical Center Göttingen, Göttingen, Germany.
Ute BechererDepartment of Cellular Neurophysiology, Center for Integrative Physiology and Molecular Medicine (CIPMM), Saarland University, Homburg, Germany.
Tobias MoserBiochemistry of Membrane Dynamics Group, Institute for Auditory Neuroscience, University Medical Center Göttingen, Göttingen, Germany.ORCID http://orcid.org/0000-0001-7145-0533
Edward S BoydenDepartment of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-0419-3351
A Radu AricescuMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0003-3783-1388
Markus SauerDepartment of Biotechnology and Biophysics, Biocenter, University of Würzburg, Am Hubland, Würzburg, Germany.ORCID http://orcid.org/0000-0002-1692-3219
Felipe OpazoInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany.ORCID http://orcid.org/0000-0002-4968-9713
Silvio O RizzoliInstitute for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, Germany. srizzol@gwdg.de.ORCID http://orcid.org/0000-0002-1667-7839

Funding

Expansion MicroscopyR01EB024261 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S. · 2017 to 2025
$4.6M
Mechanisms of pathology and neuronal hyperactivity in a memory circuit in Alzheimer's diseaseR01AG070831 · NIA · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S., TSAI, LI-HUEI · 2021 to 2025
$3.2M
Deutsche Forschungsgemeinschaft (German Research Foundation) SFB1286/A03/B02/C06/Z04Deutsche Forschungsgemeinschaft (German Research Foundation) SFB894/A9Medical Research Council MC_EX_MR/T046279/1Medical Research Council MC_UP_1201/15Medical Research Council MR/L009609/1NIA NIH HHS R01 AG070831NIBIB NIH HHS R01 EB024261RCUK | Medical Research Council (MRC) MC_EX_MR/T046279/1RCUK | Medical Research Council (MRC) MC_UP_1201/15RCUK | Medical Research Council (MRC) MR/L009609/1RCUK | MRC | Medical Research Foundation MR/L009609/1
6 · The paper itself

Abstract

The attainable resolution of fluorescence microscopy has reached the subnanometer range, but this technique still fails to image the morphology of single proteins or small molecular complexes. Here, we expand the specimens at least tenfold, label them with conventional fluorophores and image them with conventional light microscopes, acquiring videos in which we analyze fluorescence fluctuations. One-step nanoscale expansion (ONE) microscopy enables the visualization of the shapes of individual membrane and soluble proteins, achieving around 1-nm resolution. We show that conformational changes are readily observable, such as those undergone by the ~17-kDa protein calmodulin upon Ca

Indexed as

NanotechnologyProteinsCalciumCalmodulinHumansMicroscopy, FluorescenceParkinson DiseaseProtein ConformationCalciumCalmodulinProteins

Identifiers

PMID39385007
PMCPMC7616833

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.