Evidence map›Paper›PMID 39384967›Full record

ArticleCommunications biology2024

Sex-specific single cell-level transcriptomic signatures of Rett syndrome disease progression.

Osman Sharifi, Viktoria Haghani, Kari E Neier, Keith J Fraga, Ian Korf, Sophia M Hakam, Gerald Quon, Nelson Johansen, Dag H Yasui, Janine M LaSalle

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  3. Review
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  5. Article
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  8. Article
  9. Modulating alternative splicing ofScience translational medicine · 2026
    Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. RettDb: the Rett syndrome omics database to navigate the Rett syndrome genomic landscape.Database : the journal of biological databases and curation · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Osman SharifiMedical Microbiology and Immunology, School of Medicine, University of California, Davis, CA, USA.ORCID 0000-0002-4630-2587
Viktoria HaghaniMedical Microbiology and Immunology, School of Medicine, University of California, Davis, CA, USA.ORCID 0000-0002-3700-4027
Kari E NeierMedical Microbiology and Immunology, School of Medicine, University of California, Davis, CA, USA.
Keith J FragaGenome Center, University of California, Davis, CA, USA.
Ian KorfGenome Center, University of California, Davis, CA, USA.
Sophia M HakamMedical Microbiology and Immunology, School of Medicine, University of California, Davis, CA, USA.
Gerald QuonGenome Center, University of California, Davis, CA, USA.ORCID 0000-0002-1716-0153
Nelson JohansenGenome Center, University of California, Davis, CA, USA.
Dag H Yasui *Medical Microbiology and Immunology, School of Medicine, University of California, Davis, CA, USA.ORCID 0000-0003-1178-988X
Janine M LaSalle *Medical Microbiology and Immunology, School of Medicine, University of California, Davis, CA, USA. jmlasalle@ucdavis.edu.ORCID 0000-0002-3480-2031

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI KC KENT LLOYD · 2002 to 2026
$84.9M
UC Davis Environmental Health Sciences Core CenterP30ES023513 · NIEHS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Irva Hertz-Picciotto · 2015 to 2026
$26.0M
Research Project: Pathologic Significance of Maternal AutoantibodiesP50HD103526 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEONARD J. ABBEDUTO, Melissa Dawn Bauman · 2020 to 2026
$9.7M
Neuroimmune interactions in Rett syndromeR01AA027075 · NIAAA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LASALLE, JANINE M · 2018 to 2022
$2.9M
Placental identified NHIP regulating neuronal oxidative stress in autismR01HD112991 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Janine M LaSalle · 2023 to 2026
$2.7M
UC Davis Shared Astrios Cell SorterS10OD018223 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SHACKLETT, BARBARA L. · 2015 to 2015
$555k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NCI NIH HHS P30 CA093373NIAAA NIH HHS R01 AA027075NICHD NIH HHS P50 HD103526NICHD NIH HHS R01 HD112991NIEHS NIH HHS P30 ES023513NIH HHS S10 OD010786NIH HHS S10 OD018223U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P30CA093373U.S. Department of Health & Human Services | NIH | National Institute on Alcohol Abuse and Alcoholism (NIAAA) R01AA027075U.S. Department of Health & Human Services | NIH | NIH Office of the Director (OD) S10OD010786U.S. Department of Health & Human Services | NIH | NIH Office of the Director (OD) S10OD018223
6 · The paper itself

Abstract

Dominant X-linked diseases are uncommon due to female X chromosome inactivation (XCI). While random XCI usually protects females against X-linked mutations, Rett syndrome (RTT) is a female neurodevelopmental disorder caused by heterozygous MECP2 mutation. After 6-18 months of typical neurodevelopment, RTT girls undergo a poorly understood regression. We performed longitudinal snRNA-seq on cerebral cortex in a construct-relevant Mecp2e1 mutant mouse model of RTT, revealing transcriptional effects of cell type, mosaicism, and sex on progressive disease phenotypes. Across cell types, we observed sex differences in the number of differentially expressed genes (DEGs) with 6x more DEGs in mutant females than males. Unlike males, female DEGs emerged prior to symptoms, were enriched for homeostatic gene pathways in distinct cell types over time and correlated with disease phenotypes and human RTT cortical cell transcriptomes. Non-cell-autonomous effects were prominent and dynamic across disease progression of Mecp2e1 mutant females, indicating that wild-type-expressing cells normalize transcriptional homeostasis. These results advance our understanding of RTT progression and treatment.

Indexed as

Disease ProgressionMethyl-CpG-Binding Protein 2Rett SyndromeTranscriptomeAnimalsDisease Models, AnimalFemaleHumansMaleMiceMutationSingle-Cell AnalysisMecp2 protein, mouseMethyl-CpG-Binding Protein 2

Identifiers

PMID39384967
PMCPMC11464704

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.