Evidence map›Paper›PMID 39384951›Full record

ReviewNature reviews. Cancer2024

Steering research on mRNA splicing in cancer towards clinical translation.

Olga Anczukow, Frédéric H-T Allain, Brittany L Angarola, Douglas L Black, Angela N Brooks, Chonghui Cheng, Ana Conesa, Edie I Crosse, Eduardo Eyras, Ernesto Guccione and 9 more

Abstract readReview
In one paragraph

Review in Nature reviews. Cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. RNA splicing in health and disease.Molecular biomedicine · 2026
    Review
  5. Article
  6. Article
  7. Predicting human mRNA isoform levels from site-specific splicing kineticsbioRxiv : the preprint server for biology · 2026
    Article
  8. Role of alternative splicing in cancer progression.Irish journal of medical science · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. RNA Splicing as a Therapeutic Target in Cancer.Annual review of pharmacology and toxicology · 2026
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Olga AnczukowThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA. olga.anczukow@jax.org.ORCID http://orcid.org/0000-0003-0516-2677
Frédéric H-T AllainDepartment of Biology, Eidgenössische Technische Hochschule (ETH), Zürich, Switzerland.
Brittany L AngarolaThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.
Douglas L BlackDepartment of Microbiology, Immunology, and Molecular Genetics, University of California Los Angeles, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-2705-8187
Angela N BrooksDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.ORCID http://orcid.org/0000-0002-7898-3073
Chonghui ChengDepartment of Molecular and Human Genetics, Lester & Sue Breast Center, Baylor College of Medicine, Houston, TX, USA.
Ana ConesaInstitute for Integrative Systems Biology, Spanish National Research Council, Paterna, Spain.
Edie I CrosseBasic Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Eduardo EyrasShine-Dalgarno Centre for RNA Innovation, Australian National University, Canberra, Australian Capital Territory, Australia.ORCID http://orcid.org/0000-0003-0793-6218
Ernesto GuccioneDepartment of Oncological Sciences, Mount Sinai School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0001-7764-5307
Sydney X LuDepartment of Medicine, Stanford Medical School, Palo Alto, CA, USA.
Karla M NeugebauerDepartment of Molecular Biophysics & Biochemistry, Yale University, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-3835-6761
Priyanka SehgalDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Xiao SongDepartment of Neurology, Northwestern University, Chicago, IL, USA.
Zuzana TothovaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0001-6668-532X
Juan ValcárcelCentre for Genomic Regulation, Institució Catalana de Recerca i Estudis Avançats, Barcelona, Spain.ORCID http://orcid.org/0000-0001-5398-3571
Kevin M WeeksDepartment of Chemistry, University of North Carolina, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0002-6748-9985
Gene W YeoDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-0799-6037
Andrei Thomas-TikhonenkoDivision of Cancer Pathobiology, Children's Hospital of Philadelphia, Philadelphia, PA, USA. andreit@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0002-2739-2206

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI Paul Robson · 1985 to 2026
$61.9M
THE TISCH CANCER INSTITUTE - CANCER CENTER SUPPORT GRANTP30CA196521 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Ramon E Parsons · 2015 to 2026
$35.4M
Mechanisms of Post-transcriptional Gene Regulation by RNA Binding ProteinsR35GM136426 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Douglas L Black · 2020 to 2026
$5.4M
Regulation of alternative splicing during epithelial-mesenchymal transitionR35GM131876 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Chonghui Cheng · 2019 to 2026
$3.9M
Cassette exons in neoplastic pro-B-cells: implications for immunotherapyU01CA232563 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI BARASH, YOSEPH, THOMAS-TIKHONENKO, ANDREI · 2018 to 2022
$3.5M
MYC-regulated RNA Binding Protein Networks and Spliced Isoforms Driving CancerR01CA248317 · NCI · JACKSON LABORATORY · PI ANCZUKOW-CAMARDA, OLGA · 2021 to 2025
$2.7M
Therapeutic targeting of RNA splicing catalysis through inhibition of Protein Arginine MethylationR01CA249204 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GUCCIONE, ERNESTO · 2020 to 2024
$2.5M
Mechanisms of post-transcriptional regulation of splicing factorsR01GM138541 · NIGMS · JACKSON LABORATORY · PI ANCZUKOW-CAMARDA, OLGA · 2020 to 2024
$2.1M
Altered RNA fates due to an MDS driver mutation in SF3B1R01HL167071 · NHLBI · YALE UNIVERSITY · PI Karla M Neugebauer, Manoj M. Pillai · 2024 to 2026
$1.8M
Biogenesis and function of a novel class of stress-induced long non-coding RNAsR01GM140735 · NIGMS · YALE UNIVERSITY · PI NEUGEBAUER, KARLA M, STEITZ, JOAN A. · 2021 to 2024
$1.7M
Investigating the mechanisms of CD44s splice isoform in breast cancer metastasisR01CA182467 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHENG, CHONGHUI · 2014 to 2018
$1.6M
Dissecting the Roles and Requirements for RBM39 in Acute Myeloid Leukemia and Normal HematopoiesisK08CA245242 · NCI · STANFORD UNIVERSITY · PI LU, SYDNEY X · 2020 to 2024
$1.2M
NCI NIH HHS K08 CA245242NCI NIH HHS P30 CA034196NCI NIH HHS P30 CA196521NCI NIH HHS R01 CA182467NCI NIH HHS R01 CA248317NCI NIH HHS R01 CA249204NCI NIH HHS U01 CA232563NHLBI NIH HHS R01 HL167071NIA NIH HHS R21 AG080243NIGMS NIH HHS R01 GM138541NIGMS NIH HHS R01 GM140735NIGMS NIH HHS R35 GM131876NIGMS NIH HHS R35 GM136426
6 · The paper itself

Abstract

Splicing factors are affected by recurrent somatic mutations and copy number variations in several types of haematologic and solid malignancies, which is often seen as prima facie evidence that splicing aberrations can drive cancer initiation and progression. However, numerous spliceosome components also 'moonlight' in DNA repair and other cellular processes, making their precise role in cancer difficult to pinpoint. Still, few would deny that dysregulated mRNA splicing is a pervasive feature of most cancers. Correctly interpreting these molecular fingerprints can reveal novel tumour vulnerabilities and untapped therapeutic opportunities. Yet multiple technological challenges, lingering misconceptions, and outstanding questions hinder clinical translation. To start with, the general landscape of splicing aberrations in cancer is not well defined, due to limitations of short-read RNA sequencing not adept at resolving complete mRNA isoforms, as well as the shallow read depth inherent in long-read RNA-sequencing, especially at single-cell level. Although individual cancer-associated isoforms are known to contribute to cancer progression, widespread splicing alterations could be an equally important and, perhaps, more readily actionable feature of human cancers. This is to say that in addition to 'repairing' mis-spliced transcripts, possible therapeutic avenues include exacerbating splicing aberration with small-molecule spliceosome inhibitors, targeting recurrent splicing aberrations with synthetic lethal approaches, and training the immune system to recognize splicing-derived neoantigens.

Indexed as

NeoplasmsRNA SplicingHumansRNA, MessengerSpliceosomesTranslational Research, BiomedicalRNA, Messenger

Identifiers

PMID39384951
PMCPMC11698124

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.