Evidence map›Paper›PMID 39384813›Full record

ArticleNature communications2024

Disordered regions of human eIF4B orchestrate a dynamic self-association landscape.

Bikash Chandra Swain, Pascale Sarkis, Vanessa Ung, Sabrina Rousseau, Laurent Fernandez, Ani Meltonyan, V Esperance Aho, Davide Mercadante, Cameron D Mackereth, Mikayel Aznauryan

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Precise andACS central science · 2025
    Article
  7. A coarse-grained model for disordered proteins under crowded conditions.Protein science : a publication of the Protein Society · 2025
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Bikash Chandra Swain *University of Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, F-33600, Pessac, France.ORCID 0000-0001-6002-8652
Pascale Sarkis *University of Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, F-33600, Pessac, France.ORCID 0009-0002-3587-6611
Vanessa Ung *School of Chemical Sciences, University of Auckland, Auckland, New Zealand.ORCID 0000-0002-9494-2837
Sabrina RousseauUniversity of Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, F-33600, Pessac, France.ORCID 0009-0001-4204-965X
Laurent FernandezUniversity of Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, F-33600, Pessac, France.ORCID 0000-0002-0613-9586
Ani MeltonyanUniversity of Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, F-33600, Pessac, France.
V Esperance AhoUniversity of Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, F-33600, Pessac, France.ORCID 0009-0007-4558-3130
Davide MercadanteSchool of Chemical Sciences, University of Auckland, Auckland, New Zealand.ORCID 0000-0001-6792-7706
Cameron D MackerethUniversity of Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, F-33000, Bordeaux, France. cameron.mackereth@inserm.fr.ORCID 0000-0002-0776-7947
Mikayel AznauryanUniversity of Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, F-33600, Pessac, France. mikayel.aznauryan@inserm.fr.ORCID 0000-0002-5395-3441

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-20-CE11-0007Fondation pour la Recherche Médicale (Foundation for Medical Research in France) AJE20171239128
6 · The paper itself

Abstract

Eukaryotic translation initiation factor eIF4B is required for efficient cap-dependent translation, it is overexpressed in cancer cells, and may influence stress granule formation. Due to the high degree of intrinsic disorder, eIF4B is rarely observed in cryo-EM structures of translation complexes and only ever by its single structured RNA recognition motif domain, leaving the molecular details of its large intrinsically disordered region (IDR) unknown. By integrating experiments and simulations we demonstrate that eIF4B IDR orchestrates and fine-tunes an intricate transition from monomers to a condensed phase, in which large-size dynamic oligomers form before mesoscopic phase separation. Single-molecule spectroscopy combined with molecular simulations enabled us to characterize the conformational ensembles and underlying intra- and intermolecular dynamics across the oligomerization transition. The observed sensitivity to ionic strength and molecular crowding in the self-association landscape suggests potential regulation of eIF4B nanoscopic and mesoscopic behaviors such as driven by protein modifications, binding partners or changes to the cellular environment.

Indexed as

Molecular Dynamics SimulationCryoelectron MicroscopyEukaryotic Initiation Factor-2BEukaryotic Initiation FactorsHumansIntrinsically Disordered ProteinsProtein BindingProtein ConformationProtein MultimerizationSingle Molecule ImagingeIF-4BEukaryotic Initiation Factor-2BEukaryotic Initiation FactorsIntrinsically Disordered Proteins

Identifiers

PMID39384813
PMCPMC11464913

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.