Evidence map›Paper›PMID 39384780›Full record

ArticleNature communications2024

Structural basis for antibiotic transport and inhibition in PepT2.

Joanne L Parker, Justin C Deme, Simon M Lichtinger, Gabriel Kuteyi, Philip C Biggin, Susan M Lea, Simon Newstead

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Joanne L Parker *Department of Biochemistry, University of Oxford, Oxford, UK. joanne.parker@bioch.ox.ac.uk.ORCID 0000-0003-2964-2720
Justin C Deme *Center for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, USA.ORCID 0000-0001-8811-9871
Simon M Lichtinger *Department of Biochemistry, University of Oxford, Oxford, UK.ORCID 0000-0002-0643-6724
Gabriel KuteyiDepartment of Biochemistry, University of Oxford, Oxford, UK.
Philip C BigginDepartment of Biochemistry, University of Oxford, Oxford, UK. philip.biggin@bioch.ox.ac.uk.ORCID 0000-0001-5100-8836
Susan M LeaCenter for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, USA. susan.lea@nih.gov.ORCID 0000-0001-9287-8053
Simon NewsteadDepartment of Biochemistry, University of Oxford, Oxford, UK. simon.newstead@bioch.ox.ac.uk.ORCID 0000-0001-7432-2270

Funding

RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/L000253/1RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/X035603/1Wellcome TrustWellcome Trust 218514Wellcome Trust (Wellcome) 215519/Z/19/ZWellcome Trust (Wellcome) 219531/Z/19/Z
6 · The paper itself

Abstract

The uptake and elimination of beta-lactam antibiotics in the human body are facilitated by the proton-coupled peptide transporters PepT1 (SLC15A1) and PepT2 (SLC15A2). The mechanism by which SLC15 family transporters recognize and discriminate between different drug classes and dietary peptides remains unclear, hampering efforts to improve antibiotic pharmacokinetics through targeted drug design and delivery. Here, we present cryo-EM structures of the proton-coupled peptide transporter, PepT2 from Rattus norvegicus, in complex with the widely used beta-lactam antibiotics cefadroxil, amoxicillin and cloxacillin. Our structures, combined with pharmacophore mapping, molecular dynamics simulations and biochemical assays, establish the mechanism of beta-lactam antibiotic recognition and the important role of protonation in drug binding and transport.

Indexed as

Anti-Bacterial AgentsCryoelectron MicroscopyMolecular Dynamics SimulationSymportersAmoxicillinAnimalsBiological TransportCefadroxilHumansRatsAmoxicillinAnti-Bacterial AgentsCefadroxilhydrogen-coupled oligopeptide transporter PepT2Symporters

Identifiers

PMID39384780
PMCPMC11464717

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.