Evidence map›Paper›PMID 39383864›Full record

ArticleCell2024

Structure of TnsABCD transpososome reveals mechanisms of targeted DNA transposition.

Shukun Wang, Romana Siddique, Mark C Hall, Phoebe A Rice, Leifu Chang

Abstract read
In one paragraph

Article in Cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shukun WangDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
Romana SiddiqueDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
Mark C HallDepartment of Biochemistry, Purdue University, West Lafayette, IN 47907, USA; Purdue Institute for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Phoebe A RiceDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637, USA.
Leifu ChangDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA; Purdue Institute for Cancer Research, Purdue University, West Lafayette, IN 47907, USA. Electronic address: lchang18@purdue.edu.

Funding

Cdc14 phosphatase - novel roles in drug resistance, virulence, and the response to cell wall stress in fungal pathogensR01AI168050 · NIAID · PURDUE UNIVERSITY · PI Mark C Hall · 2023 to 2026
$2.4M
Molecular basis for CRISPR RNA-guided nucleic acid cleavage and DNA transpositionR01GM138675 · NIGMS · PURDUE UNIVERSITY · PI CHANG, LEIFU · 2020 to 2024
$1.8M
Machinery of the Microbial MobilomeR35GM149586 · NIGMS · UNIVERSITY OF CHICAGO · PI PHOEBE A RICE · 2023 to 2026
$1.8M
Development and application of auxin-inducible degradation in Candida pathogensR21AI174123 · NIAID · PURDUE UNIVERSITY · PI HALL, MARK C · 2023 to 2024
$423k
NIAID NIH HHS R01 AI168050NIAID NIH HHS R21 AI174123NIGMS NIH HHS R01 GM138675NIGMS NIH HHS R35 GM149586
6 · The paper itself

Abstract

Tn7-like transposons are characterized by their ability to insert specifically into host chromosomes. Recognition of the attachment (att) site by TnsD recruits the TnsABC proteins to form the transpososome and facilitate transposition. Although this pathway is well established, atomic-level structural insights of this process remain largely elusive. Here, we present the cryo-electron microscopy (cryo-EM) structures of the TnsC-TnsD-att DNA complex and the TnsABCD transpososome from the Tn7-like transposon in Peltigera membranacea cyanobiont 210A, a type I-B CRISPR-associated transposon. Our structures reveal a striking bending of the att DNA, featured by the intercalation of an arginine side chain of TnsD into a CC/GG dinucleotide step. The TnsABCD transpososome structure reveals TnsA-TnsB interactions and demonstrates that TnsC not only recruits TnsAB but also directly participates in the transpososome assembly. These findings provide mechanistic insights into targeted DNA insertion by Tn7-like transposons, with implications for improving the precision and efficiency of their genome-editing applications.

Indexed as

Cryoelectron MicroscopyDNA Transposable ElementsBacterial ProteinsDNA, BacterialModels, MolecularTransposasesBacterial ProteinsDNA, BacterialDNA Transposable ElementsTransposasesAAA+ATPaseCRISPRcryo-EMTn7TnsATnsBTnsCTnsDtransposontranspososome

Identifiers

PMID39383864
PMCPMC11606762

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.