Evidence map›Paper›PMID 39383862›Full record

ArticleCell2024

Disruption of cellular plasticity by repeat RNAs in human pancreatic cancer.

Eunae You, Patrick Danaher, Chenyue Lu, Siyu Sun, Luli Zou, Ildiko E Phillips, Alexandra S Rojas, Natalie I Ho, Yuhui Song, Michael J Raabe and 19 more

Abstract read
In one paragraph

Article in Cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Towards liquid biopsy-based analysis of antitumour immunity.Nature reviews. Clinical oncology · 2026
    Review
  2. Review
  3. Article
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  5. Article
  6. Review
  7. Article
  8. Revisiting Clonal Evolution Through the Light of Retrotransposons.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Eunae YouMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Patrick DanaherNanoString Technologies, Seattle, WA 98109, USA.
Chenyue LuMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA; Department of Data Science, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Siyu SunComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Luli ZouDepartment of Data Science, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA; Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
Ildiko E PhillipsMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Alexandra S RojasMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Natalie I HoMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Yuhui SongMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Michael J RaabeMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Katherine H XuMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Peter M RichieriMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Hao LiComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Natalie AstonMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Rebecca L PorterDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Bidish K PatelMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Linda T NiemanMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA.
Nathan SchurmanNanoString Technologies, Seattle, WA 98109, USA.
Briana M HudsonNanoString Technologies, Seattle, WA 98109, USA.
Khrystyna NorthNanoString Technologies, Seattle, WA 98109, USA.
Sarah E ChurchNanoString Technologies, Seattle, WA 98109, USA.
Vikram DeshpandeMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA; Department of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Andrew S LissDepartment of Surgery, Massachusetts General Hospital, Boston, MA 02114, USA.
Tae K KimNanoString Technologies, Seattle, WA 98109, USA.
Yi CuiNanoString Technologies, Seattle, WA 98109, USA.
Youngmi KimNanoString Technologies, Seattle, WA 98109, USA.
Benjamin D GreenbaumComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA; Physiology, Biophysics & Systems Biology, Weill Cornell Medicine, Weill Cornell Medical College, New York, NY 10065, USA.
Martin J AryeeDepartment of Data Science, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA; Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA. Electronic address: martin.aryee@ds.dfci.harvard.edu.
David T TingMass General Cancer Center, Harvard Medical School, Charlestown, MA 02129, USA; Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. Electronic address: dting1@mgh.harvard.edu.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Ramnik J Xavier · 1991 to 2026
$35.3M
Transgenic CoreP30DK057521 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI BROWN, DENNIS · 2000 to 2019
$31.4M
P&F programP30DK135043 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Dennis Brown · 2023 to 2026
$5.4M
Understanding the Relationship of Repeat Expression and MetastasisR01CA240924 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2019 to 2023
$3.3M
A Statistical Physics Framework for Understanding the Role of Repeat RNA in Tumor ImmunityU01CA228963 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2020 to 2024
$3.2M
Mechanistic Understanding for the Role of Lin28b in Pancreatic Cancer ProgressionR01CA235412 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI EL-BARDEESY, NABEEL, MOSTOSLAVSKY, RAUL · 2019 to 2023
$3.2M
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA235412NCI NIH HHS R01 CA240924NCI NIH HHS U01 CA228963NIDDK NIH HHS P30 DK043351NIDDK NIH HHS P30 DK057521NIDDK NIH HHS P30 DK135043
6 · The paper itself

Abstract

Aberrant expression of repeat RNAs in pancreatic ductal adenocarcinoma (PDAC) mimics viral-like responses with implications on tumor cell state and the response of the surrounding microenvironment. To better understand the relationship of repeat RNAs in human PDAC, we performed spatial molecular imaging at single-cell resolution in 46 primary tumors, revealing correlations of high repeat RNA expression with alterations in epithelial state in PDAC cells and myofibroblast phenotype in cancer-associated fibroblasts (CAFs). This loss of cellular identity is observed with dosing of extracellular vesicles (EVs) and individual repeat RNAs of PDAC and CAF cell culture models pointing to cell-cell intercommunication of these viral-like elements. Differences in PDAC and CAF responses are driven by distinct innate immune signaling through interferon regulatory factor 3 (IRF3). The cell-context-specific viral-like responses to repeat RNAs provide a mechanism for modulation of cellular plasticity in diverse cell types in the PDAC microenvironment.

Indexed as

Carcinoma, Pancreatic DuctalCell PlasticityPancreatic NeoplasmsTumor MicroenvironmentCancer-Associated FibroblastsCell Line, TumorExtracellular VesiclesGene Expression Regulation, NeoplasticHumansImmunity, InnateInterferon Regulatory Factor-3MyofibroblastsRNASignal TransductionInterferon Regulatory Factor-3IRF3 protein, humanRNAcancer-associated fibroblastcellular plasticityextracellular vesiclespancreatic cancerrepeat RNAspatial transcriptomicstumor microenvironment

Identifiers

PMID39383862
PMCPMC11645244

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.