Evidence map›Paper›PMID 39383173›Full record

ArticlePloS one2024

Genotype distribution and allele frequency of thioester-containing protein 1(Tep1) and its effect on development of Plasmodium oocyst in populations of Anopheles arabiensis in Ethiopia.

Arega Tsegaye, Assalif Demissew, Ashenafi Abossie, Hallelujah Getachew, Kassahun Habtamu, Teshome Degefa, Xiaoming Wang, Ming-Chieh Lee, Daibin Zhong, James W Kazura and 2 more

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Arega TsegayeDepartment of Biology, College of Natural Science, Jimma University, Jimma, Ethiopia.ORCID 0000-0002-7985-9701
Assalif DemissewTropical and Infectious Diseases Research Center (TIDRC), Jimma University, Jimma, Ethiopia.ORCID 0000-0001-7054-0641
Ashenafi AbossieFaculty of Health Sciences, School of Medical Laboratory Sciences, Jimma University, Jimma, Ethiopia.
Hallelujah GetachewFaculty of Health Sciences, School of Medical Laboratory Sciences, Jimma University, Jimma, Ethiopia.
Kassahun HabtamuTropical and Infectious Diseases Research Center (TIDRC), Jimma University, Jimma, Ethiopia.
Teshome DegefaFaculty of Health Sciences, School of Medical Laboratory Sciences, Jimma University, Jimma, Ethiopia.ORCID 0000-0002-3518-2372
Xiaoming WangProgram in Public Health, University of California at Irvine, Irvine, CA, United States of America.
Ming-Chieh LeeProgram in Public Health, University of California at Irvine, Irvine, CA, United States of America.ORCID 0000-0002-2462-6089
Daibin ZhongProgram in Public Health, University of California at Irvine, Irvine, CA, United States of America.
James W KazuraCenter for Global Health & Diseases, School of Medicine, Case Western Reserve University, Cleveland, OH, United States of America.
Guiyun YanProgram in Public Health, University of California at Irvine, Irvine, CA, United States of America.
Delenasaw YewhalawFaculty of Health Sciences, School of Medical Laboratory Sciences, Jimma University, Jimma, Ethiopia.

Funding

Vector Biology of Invasive Anopheles stephensi in Rural to Urban Landscapes in EthiopiaU19AI129326 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI Guiyun Yan · 2017 to 2026
$19.9M
Research Training in Mosquito Genomics and Bioinformat*D43TW001505 · FIC · UNIVERSITY OF CALIFORNIA-IRVINE · PI Guiyun Yan · 2000 to 2026
$6.0M
FIC NIH HHS D43 TW001505NIAID NIH HHS U19 AI129326
6 · The paper itself

Abstract

backgroundThioester-containing protein 1 (TEP1) is a crucial component of mosquitoes' natural resistance to parasites. To effectively combat malaria, there is a need to better understand how TEP1 polymorphism affects phenotypic traits during infections. Therefore, the purpose of this study was to determine the Tep1 genotype frequency in malaria vector populations from south-western Ethiopia and investigate its effect on Plasmodium oocyst development in Anopheles arabiensis populations.

methodsUsing standard dippers, Anopheles mosquito larvae were collected from aquatic habitats in Asendabo, Arjo Dedessa, and Gambella in 2019 and 2020. Collected larvae were reared to adults and identified morphologically. Female An. gambiae s.l. were allowed to feed on infected blood containing the same number of gametocytes obtained from P. falciparum and P. vivax gametocyte-positive individuals using indirect membrane feeding methods. Polymerase Chain Reaction (PCR) was used to identify An. gambiae s.l. sibling species. Three hundred thirty An. gambiae s.l. were genotyped using Restricted Fragment Length Polymorphism (RFLP) PCR and sub samples were sequenced to validate the TEP1 genotyping.

resultsAmong the 330 samples genotyped, two TEP1 alleles, TEP1*S1 (82% frequency) and TEP1*R1 (18% frequency), were identified. Three equivalent genotypes, TEP1*S1/S1, TEP1*R1/R1, and TEP1*S1/R1, had mean frequencies of 65.15%, 2.12%, and 32.73%, respectively. The nucleotide diversity was ranging from 0.36554 to 0. 46751 while haplotype diversity ranged from 0.48871 to 0.63161, across all loci. All sample sites had positive Tajima's D and Fu's Fs values. There was a significant difference in the TEP1 allele frequency and genotype frequency among mosquito populations (p < 0.05), except populations of Anopheles arabiensis from Asendabo and Gambella (p > 0.05). In addition, mosquitoes with the TEP1 *RR genotype were susceptible and produced fewer Plasmodium oocysts than mosquitoes with the TEP1 *SR and TEP1 *SS genotypes.

conclusionThe alleles identified in populations of An. arabiensis were TEP1*R1 and TEP1*S1. There was no significant variation in TEP1*R1 allele frequency between the high and low transmission areas. Furthermore, An. arabiensis carrying the TEP1*R1 allele was susceptible to Plasmodium infection. Further studies on vector-parasite interactions, particularly on the TEP1 gene, are required for vector control techniques.

Indexed as

AnophelesGene FrequencyGenotypeInsect ProteinsMosquito VectorsOocystsAnimalsEthiopiaFemaleMalariaPlasmodiumPlasmodium falciparumPlasmodium vivaxInsect ProteinsTEP1 protein, Anopheles gambiae

Identifiers

PMID39383173
PMCPMC11463741

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.